cluster # 7722

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Schistosoma mansoni
cluster # 7722 cluster # 7722 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7722#0 length = 739 sequences # 3

consensus_7722#1 length = 429 sequences # 2

consensusID : consensus_7722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 739
fasta sequence

                              [AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATCAGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTCTGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCGGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCTCCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGATCTACGTTAATCATACCGGCG]

[+] EMBL CD059706             [AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATCAGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTCTGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCG                                                                                                                                         ]
[-] EMBL CD094929             [                                                                                                                                                                                                  CTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGTCAGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCTCCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGATCTACGTTAATCATACCGGCG]
[-] EMBL CD120607             [                                                                                                                                                                                                              CAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTTTAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTCTGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACTAAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCCTATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTGAATACTTTG                                                                                                                                                                                              ]




>consensus_7722#0
AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGG
ATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATC
AGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTC
TGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTT
TAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTC
TGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACT
AAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCC
TATTTCAAAACTGATTGACCCAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTCCT
TTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTCTG
AATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCCGT
CGGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCTCC
CATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGATC
TACGTTAATCATACCGGCG

consensusID : consensus_7722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 429
fasta sequence

                              [CCAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACTA]

[+] EMBL CD117074             [CCAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACT ]
[-] EMBL CD117605             [ CAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCGGACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGAACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCAGAATTCTTAACCAGATGGTAGACAGCACCTAATGGCTTGACTA]




>consensus_7722#1
CCAGTGGAGGTTGTGGGACGATTTGCTCCATTAAGACTGTTCGAACTAATTTCCTCAGCG
GACAGTGTCATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGACAGCCGAAGTAGAT
ATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAAGTTCGAACGGGAGAGGA
ACTCCTTTGGGAGTAAGTGCGCGTCCAACACGAAGTTGTTGTCCCGCCAAGTCGAAACAA
TTCATGCTTGAGACGGCCGCGATAGCAGCTTCTTCCGATTCGAAATCAATATAACCGAAT
CCCCGATGACGACCAGAACATTTAGGATCTGGATACAAGCTGATCGAATAGCGTAGGCAA
GAAGTTGCGGAAAATTAACGTCACCAGAATTCTTGACCAGATGGTAGACAGCACCTAATG
GCTTGACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7722#0      AGCTTCTTCTTATTCGAAATCAATATAACCGAATCCCCGATGACGACCAGAACATTTAGG 60
consensus_7722#1      ---------CCAGTGGAGGTTG-TGGGACGATTTGCTCCATTAAGACTGTTCGAACTAAT 50
                                 * * **  *   *   **    * * * ** * ***      *  **  

consensus_7722#0      ATCTGGATACAAGCTGCAGCTGTTTACTTTCCCAAATGCCTCGAATACAGTTTGAATATC 120
consensus_7722#1      TTCCTCA-GCGGACAGTGTC--ATAACTTTAGCGGAAATTGATGCGGCTGCAAACGCGAC 107
                       **   *  *   * *   *   * *****  *  *           * *         *

consensus_7722#0      AGACTCGGTTAACTCTGGATGAACTGAAGCAATGTATACACGAGGCTTAGTACTGACTTC 180
consensus_7722#1      AGCCGAAGTAGATATTGGATTGGTGGAAATTGTATTTAAACTTTTGTTAGCATTAA---- 163
                      ** *   **  *   *****     ***    * * ** **     **** * * *    

consensus_7722#0      TGCGCGTAGTTCGGCTTCTAAAGCAGCAGTTTGAGGAGCGTTGCTTGGTCGCCCGACCTT 240
consensus_7722#1      --------GTTCGAACGGGAGAGGAACTCCTTTGGGAG---TAAGTGCGCGTCCAACACG 212
                              *****      * ** * *   **  ****   *   **  ** ** **   

consensus_7722#0      TAGGTTCCTGCCAGCTAGAGTGTATCCATTCATTTGATCTAATGCCAAAGAAGCAGCTTC 300
consensus_7722#1      AAGTTGTTGTCCCGCCAAGTCGAAACAATTCATGCTTGAGACGGCCGCGATAGCAGCTTC 272
                       ** *     ** ** *    * * * ******       *  ***     *********

consensus_7722#0      TGGGACCTCGAACTCAACAAAAGCAAATCCCTTGTGTTTTTGTAGAACTGTATCCCAACT 360
consensus_7722#1      TTCCGATTCGAAATCAATATAACCGAATCCCCGATGACGAC-CAGAAC---ATTTAGGAT 328
                      *      ***** **** * ** * ******   **       *****   **      *

consensus_7722#0      AAGAGCGACAGACTTGATCGGTCCGAAGGGTGAAAACGTTTTTCTGATTTCTTCCTCTCC 420
consensus_7722#1      CTGGAT-ACAAGCT-GATCGAATAGCGTAGGCAAGAAGTTGCGGAAAATTAACGTCACCA 386
                        *    ***  ** *****    *    *  ** * ***      * **        * 

consensus_7722#0      TATTTCAAAACTGATTGACC--CAACATATATTCGACTCAAAAGAATAAGTGCCTGGTTC 478
consensus_7722#1      GAATTCTTGACCAGATGGTAGACAGCACCTAATGGCTTGACTA----------------- 429
                       * ***   **    **     ** **  ** * *  * *  *                 

consensus_7722#0      CTTTTAATTGTATTCAAGTCCTGTTGGTGCAGCTGTGCTGCTTGTTTGCTGAGTGCATTC 538
consensus_7722#1      ------------------------------------------------------------
                                                                                  

consensus_7722#0      TGAATACTTTGCTCTAAAGCATACTTCTTTGCCCTTTCAATGGCGAAACGCTGATCATCC 598
consensus_7722#1      ------------------------------------------------------------
                                                                                  

consensus_7722#0      GTCGGAGTCAACAGTGTGAAAGGTTCTTGTTAAATATTAGTTCCAAAGTGAATAGAATCT 658
consensus_7722#1      ------------------------------------------------------------
                                                                                  

consensus_7722#0      CCCATTGGCATAAGACTAATTATACCACCAGACTTCCGTAACGCGGCCGCAACACTCAGA 718
consensus_7722#1      ------------------------------------------------------------
                                                                                  

consensus_7722#0      TCTACGTTAATCATACCGGCG 739
consensus_7722#1      ---------------------