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Schistosoma mansoni
cluster # 7743 cluster # 7743       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7743#0 length = 1097 sequences # 3  
consensus_7743#1 length = 847 sequences # 2  

consensusID : consensus_7743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1097
fasta sequence
                              [TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA-GGTGTACCATTATTGCTATTGCT-GGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG]

[-] EMBL CD169327             [TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD128794             [                                                                                                                                                                                                                                                                                                                       CAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACTTTTTGGCATATTCGAATTTGCTTGAACTAAACCAG AACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA GGTGTACCATTATTGCTATTGCT GGCTGAAGGTACTTGAGTG                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD181502             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGTTAGACAGAGACAGATTNCGATTAAAGTCTG TACTACAG TTCANGGTGTACCATTATTGCTA TGCTGGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG]


>consensus_7743#0 TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTG TGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAA TGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAAT TAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTG AACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAAC ACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGC AATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGC AGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGT AGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGT AAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGG TTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAA TAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAA ATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCAGGTGTACCATT ATTGCTATTGCTGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGC CCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGA AAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGG AATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATA AAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTAC TCGTTCTATTAATTCTG



consensusID : consensus_7743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence
                              [TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT]

[+] EMBL CD183476             [TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCG                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD183579             [                                                                                                                                                                                                                                                                                                  TGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCAAAAACGAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT]


>consensus_7743#1 TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGA ATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGA ACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGA AGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATC TCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAAT TTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATT TAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACC TTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATG AAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTT TAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATA TTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGC CACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATG AATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAAC ATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGA GTCGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7743#0      TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTG 60
consensus_7743#1      ------------------------------------------------------------
                                                                                  

consensus_7743#0      TGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAA 120
consensus_7743#1      -----------------TTGTGGGAG-ATCTTTTGCTTTATCGCTTACTGAAGTGTT--A 40
                                       ***  * ** *   *  *    *** * *    *    **  *

consensus_7743#0      TGTTTTAACATATCTAG--GACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAA 178
consensus_7743#1      TTATTTGATGT-TCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACA---TGTGAG 96
                      *  *** *  * ** **  **  * ***  *  *  * *  ****  *  *   ***** 

consensus_7743#0      ATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAAC 238
consensus_7743#1      ATCAA-----TAGCTCCAGTATCTAAAGAAC--ATAGTCGATATA-AGCATTCAGTCACG 148
                      ** **     ** ** **  *** ***      *  *  **  ** * *      * *  

consensus_7743#0      TGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTA 298
consensus_7743#1      TCAATTTGAATAAGACGTGAAAGT--ATTTGA-GAAGTTTTACTCAATTCCCGAGATAAA 205
                      * ** * **** * * ****** *  ****** * ** *  *     * * * **    *

consensus_7743#0      ACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGAT 358
consensus_7743#1      TTTAAAATGCGGCCACAAGCAGAT-TCACGATCATCTCGATCATGTAACGGTTCAATTGC 264
                           *   *  *** *** ** * *     *  *     *  *        *   *   

consensus_7743#0      GCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTT 418
consensus_7743#1      GGAGTAGTATGGTCTGGCAG--TTATACTGAATTCAATTTTACC----ATGTCTAGAAGT 318
                      * * * ***   * *****   *     *   ** ** *  ***    *  * * **  *

consensus_7743#0      GCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTT 478
consensus_7743#1      ACCACAATTAGCGCACA---AATATACATCTTCATTACTTAGAT-TTAGAGAGCGACAAC 374
                       *   * **   *   *   *****   **    *  **   ** ** **  *   *   

consensus_7743#0      GTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGT 538
consensus_7743#1      GAA--------AGCATTCATTCACATTA---CTATGACACATTAT-GCATGTACTACCTT 422
                      * *        ** ***   * * * **    *  ** *  * ** *  *  ***    *

consensus_7743#0      GTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTG 598
consensus_7743#1      GTAAATCAGATGAATGACATCGTGGACA------AATACGACGATCTTCTTGAC-CGGTA 475
                      *******   *     * ** ** ****      * *     ** *  *****  *  * 

consensus_7743#0      GGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACAT 658
consensus_7743#1      GAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTT 535
                      *  * * ****   *        ***  **   * * *    ***  *    ** *   *

consensus_7743#0      AATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGC-ATTAACTGATGTGGA 717
consensus_7743#1      TGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTA 595
                        *    **  *    * ** * *   **    * **     *  ***   * ** ** *

consensus_7743#0      AAA-ATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCAGGTGTAC 776
consensus_7743#1      GCATATTCTTGATTTGAAGCTAACCA-GATTGGAATAGGTGATGGATGTGAAAAACATAT 654
                        * **  **     **  *  *  * ****  * *  ** *     **   *    ** 

consensus_7743#0      CATTATTGCTATTGCTGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCG 836
consensus_7743#1      TCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTA---CTGGTTGTCATAATTG 711
                        *     ** **     * **    *    * ** *  *     * *       *** *

consensus_7743#0      AAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTT 896
consensus_7743#1      TGGTTCATGAATTAGTCTTG----CTGAAGCA-CGATCAGTCAGATCACATGTATACACA 766
                        *  ******  **   **     *******    ***    * *    *   *     

consensus_7743#0      GTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTC-T 955
consensus_7743#1      TTCAATGTTTTAACATATCTAGGAC--GTTTTGATAAGACATTAAACTAAATGTTTTTGT 824
                       * **  * * **   ** ** ***  * *   ** *  ** *    * ** *  **  *

consensus_7743#0      AATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACT 1015
consensus_7743#1      AATCGGANAAAAA---AGAGTCGATT---------------------------------- 847
                      *** * * *** *    * ** **                                    

consensus_7743#0      GAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAA 1075
consensus_7743#1      ------------------------------------------------------------
                                                                                  

consensus_7743#0      ATTACTCGTTCTATTAATTCTG 1097
consensus_7743#1      ----------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)