These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1097 fasta sequence [TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA-GGTGTACCATTATTGCTATTGCT-GGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG] [-] EMBL CD169327 [TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCT ] [+] EMBL CD128794 [ CAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACTTTTTGGCATATTCGAATTTGCTTGAACTAAACCAG AACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA GGTGTACCATTATTGCTATTGCT GGCTGAAGGTACTTGAGTG ] [-] EMBL CD181502 [ CGTTAGACAGAGACAGATTNCGATTAAAGTCTG TACTACAG TTCANGGTGTACCATTATTGCTA TGCTGGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG] consensusID : consensus_7743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT] [+] EMBL CD183476 [TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCG ] [+] EMBL CD183579 [ TGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCAAAAACGAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7743#0 TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTG 60 consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 TGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAA 120 consensus_7743#1 -----------------TTGTGGGAG-ATCTTTTGCTTTATCGCTTACTGAAGTGTT--A 40 *** * ** * * * *** * * * ** * consensus_7743#0 TGTTTTAACATATCTAG--GACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAA 178 consensus_7743#1 TTATTTGATGT-TCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACA---TGTGAG 96 * *** * * ** ** ** * *** * * * * **** * * ***** consensus_7743#0 ATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAAC 238 consensus_7743#1 ATCAA-----TAGCTCCAGTATCTAAAGAAC--ATAGTCGATATA-AGCATTCAGTCACG 148 ** ** ** ** ** *** *** * * ** ** * * * * consensus_7743#0 TGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTA 298 consensus_7743#1 TCAATTTGAATAAGACGTGAAAGT--ATTTGA-GAAGTTTTACTCAATTCCCGAGATAAA 205 * ** * **** * * ****** * ****** * ** * * * * * ** * consensus_7743#0 ACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGAT 358 consensus_7743#1 TTTAAAATGCGGCCACAAGCAGAT-TCACGATCATCTCGATCATGTAACGGTTCAATTGC 264 * * *** *** ** * * * * * * * * consensus_7743#0 GCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTT 418 consensus_7743#1 GGAGTAGTATGGTCTGGCAG--TTATACTGAATTCAATTTTACC----ATGTCTAGAAGT 318 * * * *** * ***** * * ** ** * *** * * * ** * consensus_7743#0 GCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTT 478 consensus_7743#1 ACCACAATTAGCGCACA---AATATACATCTTCATTACTTAGAT-TTAGAGAGCGACAAC 374 * * ** * * ***** ** * ** ** ** ** * * consensus_7743#0 GTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGT 538 consensus_7743#1 GAA--------AGCATTCATTCACATTA---CTATGACACATTAT-GCATGTACTACCTT 422 * * ** *** * * * ** * ** * * ** * * *** * consensus_7743#0 GTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTG 598 consensus_7743#1 GTAAATCAGATGAATGACATCGTGGACA------AATACGACGATCTTCTTGAC-CGGTA 475 ******* * * ** ** **** * * ** * ***** * * consensus_7743#0 GGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACAT 658 consensus_7743#1 GAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTT 535 * * * **** * *** ** * * * *** * ** * * consensus_7743#0 AATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGC-ATTAACTGATGTGGA 717 consensus_7743#1 TGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTA 595 * ** * * ** * * ** * ** * *** * ** ** * consensus_7743#0 AAA-ATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCAGGTGTAC 776 consensus_7743#1 GCATATTCTTGATTTGAAGCTAACCA-GATTGGAATAGGTGATGGATGTGAAAAACATAT 654 * ** ** ** * * * **** * * ** * ** * ** consensus_7743#0 CATTATTGCTATTGCTGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCG 836 consensus_7743#1 TCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTA---CTGGTTGTCATAATTG 711 * ** ** * ** * * ** * * * * *** * consensus_7743#0 AAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTT 896 consensus_7743#1 TGGTTCATGAATTAGTCTTG----CTGAAGCA-CGATCAGTCAGATCACATGTATACACA 766 * ****** ** ** ******* *** * * * * consensus_7743#0 GTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTC-T 955 consensus_7743#1 TTCAATGTTTTAACATATCTAGGAC--GTTTTGATAAGACATTAAACTAAATGTTTTTGT 824 * ** * * ** ** ** *** * * ** * ** * * ** * ** * consensus_7743#0 AATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACT 1015 consensus_7743#1 AATCGGANAAAAA---AGAGTCGATT---------------------------------- 847 *** * * *** * * ** ** consensus_7743#0 GAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAA 1075 consensus_7743#1 ------------------------------------------------------------ consensus_7743#0 ATTACTCGTTCTATTAATTCTG 1097 consensus_7743#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||