These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 642 fasta sequence [CTCGGGCCAAGATTCGGCACGAGGCGAGTTGAAAAAATTATTCCCCTCTGTCCTTTCCCAAACACACACACACACATACAC----TTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACAATAAAATAGACATGATAGCATTGTAATACTAGTAGTATAGATATATATTATTATTCATATTTTATTGTTTCTTATTCTATTCCTATTCTATTTTGAACTACAATCATGAACTCTTTATGTTTGTGTCTGCCTCCTTGAAGTTTCCCTGTCCTGTTCTATGTTGTCATATATTGATAGGATTATCTAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAATTTTTTTTCCATATGCGTTACCGCTTGCAAAATGACCTAATACCACATAGCTGACTGCATATTTAAATTGGCTTTATCATCCCTAATACTCCATTTTCTTTTTTCCAGCCTCATGATGTTCTTCCATTCGGTTGATTATACTAGTACTACCACTATTCAGGTTGTGAGCCTATATGTGTATGTGTGAGTATATCATCAGTCTGCATCGAATTGTGTTTAGTTNTTTCC] [+] EMBL CD080507 [CTCGGGCCAAGATTCGGCACGAGGCGAGTTGAAAAAATTATTCCCCTCTGTCCTTTCCCAAACACACACACACACATACAC TTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACAATAAAATAGACATGATAGCATTGTAATACTAGTAGTATAGATATATATTATTATTCATATTTTATTGTTTCTTATTCTATTCCTATTCTATTTTGAACTACAATCATGAACTCTTTATGTTTGTGTCTGCCTCCTTGAAGTTTCCCTGTCCTGTTCTATGTTGTCATATATTGATAGGATTATCTAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAATTTTTTTTCCATATGCGTTACCGCTTGCAAAATGACCTAATACCACATAGCTGACTGCATATTTAAATTGGCTTTATCATCCCTAATACTCCATTTTCTTTTTTCCAGCCTCATGATGTTCTTCCATTCGGTTGATTATACTAGTACTACCACTATTCAGGTTGTGAGCCTATATGTGTATGTGTGAGTATATCATCAGTCTGCATCGAATTGTGTTTAGTTNTTTC ] [+] EMBL AI976879 [ TCTGTCCTTTCCCAAACACACACACACACATACACTTTGTTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACAATAAAATAGACATGATAGCATTGTAATACTAGTAGTATAGATATATATTATTATTCATATTTTATTGTTTCTTATTCTATTCCTATTCTATTTTGAACTACAATCATGAACTCTTTATGTTTGTGTCTGCCTCCTTGAAGTTTCCCTGTCCTGTTCTATGTTGTCATATATTGATAGGATTATCTAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCC TTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAA TTTTTTTCCATATGCGTTACCGCTTGCAAAATGACCTAATACCACATAGCTGACTGCATATTTAAATTGGCTTTATCATCCCTAATA ] [+] EMBL CD065255 [ TTATTGTCTTACAATAAAATAGACATGATAGCATTGTAATACTAGTAGTATAGATATATATTATTATTCATATTTTATTGTTTCTTATTCTATTCCTATTCTATTTTGAACTACAATCATGAACTCTTTATGTTTGTGTCTGCCTCCTTGAAGTTTCCCTGTCCTGTTCTATGTTGTCATATATTGATAGGgggt ] [-] EMBL CD074418 [ GTAGTATAGATATATATTATTATTCATATTTTATTGTTTCTTATTCTATTCCTATTCTATTTTGAACTACAATCATGAACTCTTTATGTTTGTGTCTGCCTCCTTGAAGTTTCCCTGTCCTGTTCTATGTTGTCATATATTGATAGGATTATCTAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAATTTTTTTTCCATATGCGTTACCGCTTGCAAAATGACCTAATACCACATAGCTGACTGCATATTTAAATTGGCTTTATCATCCCTAATACTCCATTTTCTTTTTTCCAGCCTCATGATGTTCTTCCATTCGGTTGATTATACTAGTACTACCACTATTCAGGTTGTGAGCCTATATGTGTATGTGTGAGTATATCATCAGTCTGCATCGAATTGTGTTTAGTTTTTTCC] consensusID : consensus_7795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CACATACACTTTGTTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACGAATAAAATAGACACTGATAGCATTCGTAATAACTAGTAGTAATAGAATATATAATTATTAATTCATAATTTTAATTGTTTTCTTATGTCTAGGTCCTATGTCTAGTTTTGAAACTACAATGCATGAAACTCTTAATGTNTTGTGTCTGCCTCCCTTGAAGTTGTCCCTGTCCTGTTCTAATGTTGTCAAAAAATGAATAGGATTATCTAAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAATTTTTTTCCATATGCGTTACCG] [-] EMBL CD159716 [CACATACACTTTGTTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACGAATAAAATAGACACTGATAGCATTCGTAATAACTAGTAGTAATAGAATATATAATTATTAATTCATAATTTTAATTGTTTTCTTATGTCTAGGTCCTATGTCTAGTTTTGAAACTACAATGCATGAAACTCTTAATGTNTTGTGTCTGCCTCCCTTGAAGTTGTCCCTGTCCTGTTCTAATGTTGTCAAAAAATGAATAGGATTATCTAAATCAGAGTTTTAATTGTGGATCTATCTATTCATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAATACGTAAATCATGGTAAATTTTTTTCCATATGCGTTACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7795#0 CTCGGGCCAAGATTCGGCACGAGGCGAGTTGAAAAAATTATTCCCCTCTGTCCTTTCCCA 60 consensus_7795#1 ------------------------------------------------------------ consensus_7795#0 AACACACACACACACATACACTTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTAC- 119 consensus_7795#1 --------CACATACACTTTGTTTGTGTATGTTTGTATGCTGATTTCTTATTGTCTTACG 52 **** *** ************************************** consensus_7795#0 AATAAAATAGACA-TGATAGCATT-GTAATA-CTAGTAGTA-TAGA-TATATA-TTATTA 173 consensus_7795#1 AATAAAATAGACACTGATAGCATTCGTAATAACTAGTAGTAATAGAATATATAATTATTA 112 ************* ********** ****** ********* **** ****** ****** consensus_7795#0 -TTCATATTTT--ATTGTTT-CTTAT-TCTAT-TCCTAT-TCTATTTT--GAACTACAAT 224 consensus_7795#1 ATTCATAATTTTAATTGTTTTCTTATGTCTAGGTCCTATGTCTAGTTTTGAAACTACAAT 172 ****** *** ******* ***** **** ****** **** *** ********* consensus_7795#0 -CATGAA-CTCTTTATGTTT-GTGTCTGCCTCC-TTGAAGTT-TCCCTGTCCTGTTCTA- 278 consensus_7795#1 GCATGAAACTCTTAATGTNTTGTGTCTGCCTCCCTTGAAGTTGTCCCTGTCCTGTTCTAA 232 ****** ***** **** * ************ ******** **************** consensus_7795#0 TGTTGTCATATATTGA-TAGGATTATCTAA-TCAGAGTTTTAATTGTGGATCTATCTATT 336 consensus_7795#1 TGTTGTCAAAAAATGAATAGGATTATCTAAATCAGAGTTTTAATTGTGGATCTATCTATT 292 ******** * * *** ************* ***************************** consensus_7795#0 CATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAA 396 consensus_7795#1 CATACCGTCGGTGTCATTTGAATTGTTTTCCTTTTTTTTTTGTATTTAATCAGAAACAAA 352 ************************************************************ consensus_7795#0 TACGTAAATCATGGTAAATTTTTTTTCCATATGCGTTACCGCTTGCAAAATGACCTAATA 456 consensus_7795#1 TACGTAAATCATGGTAAATTTTTTT-CCATATGCGTTACCG------------------- 392 ************************* *************** consensus_7795#0 CCACATAGCTGACTGCATATTTAAATTGGCTTTATCATCCCTAATACTCCATTTTCTTTT 516 consensus_7795#1 ------------------------------------------------------------ consensus_7795#0 TTCCAGCCTCATGATGTTCTTCCATTCGGTTGATTATACTAGTACTACCACTATTCAGGT 576 consensus_7795#1 ------------------------------------------------------------ consensus_7795#0 TGTGAGCCTATATGTGTATGTGTGAGTATATCATCAGTCTGCATCGAATTGTGTTTAGTT 636 consensus_7795#1 ------------------------------------------------------------ consensus_7795#0 NTTTCC 642 consensus_7795#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||