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Schistosoma mansoni
cluster # 7796 cluster # 7796       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7796#0 length = 1092 sequences # 4  
consensus_7796#1 length = 626 sequences # 1  

consensusID : consensus_7796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1092
fasta sequence
                              [ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA]

[-] EMBL AI975282             [ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD201652             [                                              TCACGGTACNGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTCACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD188250             [                                                                                                                                                                                                                                                                                                                                                                                   GGGGGTCCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAAC TTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCT                                                                                                                                                                                                                                                         ]
[+] EMBL CD155906             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAACGTACCACCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA]


>consensus_7796#0 ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGT TCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTG TAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGA GTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTC GCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACC CTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTAC AGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACG AAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTC CGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAAC TCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAG CTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATG CCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATC GTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAA CGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATG TCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTT AACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAA ACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGT TCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGA AAATACATCTAA



consensusID : consensus_7796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence
                              [GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA]

[+] EMBL CD156070             [GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA]


>consensus_7796#1 GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCT GTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTC TTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTAC AAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAAT CGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCG ACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATA ACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAA AGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAAT AACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAA CCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTA CACATAAATGAAATTGTCAAGCCGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7796#0      ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGT 60
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      TCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTG 120
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      TAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGA 180
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      GTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTC 240
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      GCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACC 300
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      CTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTAC 360
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      AGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACG 420
consensus_7796#1      ------------------------------------------------------------
                                                                                  

consensus_7796#0      AAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTC 480
consensus_7796#1      --GGATTTGCAA--CTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAA 56
                        *     ** *     **  *** *  **    *   * ***   * **** **  *  

consensus_7796#0      CGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAAC 540
consensus_7796#1      TCCTGTTTCAATATTTAACA-ACTACAGTTAAATTTAAAACGTAAGTC-GAATAGTTTTC 114
                        ***  ** ** *  *  * *  *   * *** *   ** * *  ** * ** *    *

consensus_7796#0      TCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAG 600
consensus_7796#1      CCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAG-------TTCCATAAT-----CAA 162
                       * *  ***  * * *      *  * **  * * *       ******* *      * 

consensus_7796#0      CTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATG 660
consensus_7796#1      TTTTCAATGAT--ATATTACAAATTCCCTTATT-GTAAATGCAAACAACACATAGATAGA 219
                       * ** ** *   * *  * *** *  ** *   ***   * **  **   **  ***  

consensus_7796#0      CCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATC 720
consensus_7796#1      CAATACTGTT---CACAATT--AAATCGTCAGGC-TTGACTCTAATATGCAGTACTATTT 273
                      *  *    *     ****     * *  *****  **      ***     * *    * 

consensus_7796#0      GTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAA 780
consensus_7796#1      ATATGCATATTTAAAAATATTAGGCCGAC-CTAGGGAGTTTATGAGTCAGTGATAACAAT 332
                       *      ** **     ** *     **  *   ** *   *    * **   ***** 

consensus_7796#0      CGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATG 840
consensus_7796#1      GAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTG--GCAGTGCGATGAA 390
                         *  * **  * ** *    * * **    * ***** * * *   ** * *      

consensus_7796#0      TCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTT 900
consensus_7796#1      TGGCGTACTAGTT-----GTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATAC 445
                      *     * **        * * * *   * *  **    *  ******   *   ***  

consensus_7796#0      AACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAA 960
consensus_7796#1      AAA-GTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTG--AGAT 502
                      **  ******   * *    ******   *    *    ** **  * ***  *   ** 

consensus_7796#0      ACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGT 1020
consensus_7796#1      AACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGG 562
                      *    ***    *  ** *****    ****   **        *  ** *  **  ** 

consensus_7796#0      TCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGA 1080
consensus_7796#1      TATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACA--CATAAATGAAATTGTCAA 620
                      *  *    * *         *  * ***   * *  **    *** * *  ***  ** *

consensus_7796#0      AAATACATCTAA 1092
consensus_7796#1      GCCGAA------ 626
                          *       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)