These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence [ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA] [-] EMBL AI975282 [ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTC ] [-] EMBL CD201652 [ TCACGGTACNGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTCACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCA ] [-] EMBL CD188250 [ GGGGGTCCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAAC TTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCT ] [+] EMBL CD155906 [ AAACGTACCACCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA] consensusID : consensus_7796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA] [+] EMBL CD156070 [GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7796#0 ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGT 60 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 TCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTG 120 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 TAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGA 180 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 GTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTC 240 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 GCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACC 300 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 CTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTAC 360 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 AGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACG 420 consensus_7796#1 ------------------------------------------------------------ consensus_7796#0 AAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTC 480 consensus_7796#1 --GGATTTGCAA--CTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAA 56 * ** * ** *** * ** * * *** * **** ** * consensus_7796#0 CGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAAC 540 consensus_7796#1 TCCTGTTTCAATATTTAACA-ACTACAGTTAAATTTAAAACGTAAGTC-GAATAGTTTTC 114 *** ** ** * * * * * * *** * ** * * ** * ** * * consensus_7796#0 TCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAG 600 consensus_7796#1 CCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAG-------TTCCATAAT-----CAA 162 * * *** * * * * * ** * * * ******* * * consensus_7796#0 CTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATG 660 consensus_7796#1 TTTTCAATGAT--ATATTACAAATTCCCTTATT-GTAAATGCAAACAACACATAGATAGA 219 * ** ** * * * * *** * ** * *** * ** ** ** *** consensus_7796#0 CCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATC 720 consensus_7796#1 CAATACTGTT---CACAATT--AAATCGTCAGGC-TTGACTCTAATATGCAGTACTATTT 273 * * * **** * * ***** ** *** * * * consensus_7796#0 GTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAA 780 consensus_7796#1 ATATGCATATTTAAAAATATTAGGCCGAC-CTAGGGAGTTTATGAGTCAGTGATAACAAT 332 * ** ** ** * ** * ** * * * ** ***** consensus_7796#0 CGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATG 840 consensus_7796#1 GAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTG--GCAGTGCGATGAA 390 * * ** * ** * * * ** * ***** * * * ** * * consensus_7796#0 TCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTT 900 consensus_7796#1 TGGCGTACTAGTT-----GTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATAC 445 * * ** * * * * * * ** * ****** * *** consensus_7796#0 AACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAA 960 consensus_7796#1 AAA-GTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTG--AGAT 502 ** ****** * * ****** * * ** ** * *** * ** consensus_7796#0 ACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGT 1020 consensus_7796#1 AACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGG 562 * *** * ** ***** **** ** * ** * ** ** consensus_7796#0 TCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGA 1080 consensus_7796#1 TATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACA--CATAAATGAAATTGTCAA 620 * * * * * * *** * * ** *** * * *** ** * consensus_7796#0 AAATACATCTAA 1092 consensus_7796#1 GCCGAA------ 626 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||