These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1593 fasta sequence [ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAATTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCCATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAGAAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGAACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCTACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAGAGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGACAACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAAGTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGNACATATATATATATATATATATATATATATATATATATA-TATATATGGGGTATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGATGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAATTATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTGCATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACACCCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAGTCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACGAACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA] [+] EMBL CD075815 [ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAATTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCCATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAGAAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGAACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCTACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAGAGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGACAACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAAGTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGNACATATATATATATATATATATATATATATATATATATATTATATATGGGG ] [+] EMBL CD073809 [ ACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGTACATATATATATATATATATATATATATATATATATATA TATATATTATATATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGATGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAATTATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTGCATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACACCCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAGTCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATT ] [-] EMBL CD082203 [ TTCTNTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACGAACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA] consensusID : consensus_7798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1032 fasta sequence [AACATATTGTTATTGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGTACAGGTCAAATGTGAGCATTTCTCTCCATGATCATAAAATTGGATCAAAAAGATTTGTTAGCTTAAGCGCGAATTTTTTCGTGTGAGTATTTCTATACGGGCACAAAAATTTCAAGTCGTGATATCATTAACATTCTTTCCGTTGCTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACACCCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAGTCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTTTCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTATAAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACGAACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACTGACATAATGGTATTATCATTTTCCATACCCGAT] [-] EMBL CD079543 [AACATATTGTTATTGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGTACAGGTCAAATGTGAGCATTTCTCTCCATGATCATAAAATTGGATCAAAAAGATTTGTTAGCTTAAGCGCGAATTTTTTCGTGTGAGTATTTCTATACGGGCACAAAAATTTCAAGTCGTGATATCATTAACATTCTTTCCGTTGCTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACACCCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAGTCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTTTCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTATAAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACGAACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCA ] [-] EMBL CD078050 [ GGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACTGACATAATGGTATTATCATTTTCCATACCCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7798#0 ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAA 60 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 TTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCC 120 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAG 180 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGA 240 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCT 300 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 ACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAG 360 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGAC 420 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 AACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAA 480 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGA 540 consensus_7798#1 ------------------------------------------------------------ consensus_7798#0 GCTTTATGNACATATATATATATATATATATATATATATATATATATATATATATGGGGT 600 consensus_7798#1 --------AACATATTGTTAT-TGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGT 51 ****** *** * * * * ** * ** * * * * * * ** consensus_7798#0 ATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGA 660 consensus_7798#1 ACAG--GTCAAATGTGA----GCATTTCTCTCCAT------GATCA--TAAAATTG--GA 95 * * * ** *** ***** ***** * ***** * ** ** ** consensus_7798#0 TGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAAT 720 consensus_7798#1 TCAAAAAGATTTGTTAGCTTAAGCGCGAA-----------TTTTTTCGTGTGAGTATTTC 144 * **** * ** ** *** *** ** ******* * * consensus_7798#0 TATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTG 780 consensus_7798#1 TAT----ACGGGCA-CAAAAAT-TTCAA-GTCGTGATATCATTAAC-ATTCTTTCCGTTG 196 *** ** * ** *** *** ***** *** *********** ** ********* consensus_7798#0 CATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACAC 840 consensus_7798#1 CTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACAC 256 * **** ***** ********** ******** ********* ****** ** ***** consensus_7798#0 CCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAG 900 consensus_7798#1 CCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAG 316 **************** ****** ******* **** ****** ********** *** consensus_7798#0 TCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTAC 960 consensus_7798#1 TCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTAC 376 ******************* **** *********************************** consensus_7798#0 CAAGAACAA-TATCTTGTGATTTCGAAG-TTAAATAAATGGAGTCTTTTCCAGTTGGTTT 1018 consensus_7798#1 CAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTT 436 ********* *** ********** *** ** *** ************************ consensus_7798#0 TCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTAT 1078 consensus_7798#1 TCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTAT 496 ** ******** ***** ********* ******************************** consensus_7798#0 AAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACG 1138 consensus_7798#1 AAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACG 556 *** * ************************************** *** *********** consensus_7798#0 AACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTAC 1198 consensus_7798#1 AACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTAC 616 ***************** ****************************************** consensus_7798#0 TTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGA 1258 consensus_7798#1 TTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGA 676 ************************************************************ consensus_7798#0 TTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGC 1318 consensus_7798#1 TTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGC 736 ********************* ************************ ************* consensus_7798#0 ATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGT 1378 consensus_7798#1 ATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGT 796 ************************************************************ consensus_7798#0 TGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGAT 1438 consensus_7798#1 TGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGAT 856 ************************************************************ consensus_7798#0 TTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATC 1498 consensus_7798#1 TTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATC 916 **************************************** ******************* consensus_7798#0 CACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGA 1558 consensus_7798#1 CACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGA 976 ******************************** *************************** consensus_7798#0 TGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA---------------------- 1593 consensus_7798#1 TGGGCGTTTTTCCATAGACCAC-TGACATAATGGTATTATCATTTTCCATACCCGAT 1032 ********************** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||