These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGAAACCTAATACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTAAAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACATCGCGCTA] [-] EMBL CD065514 [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGAAACCTAA ] [+] EMBL CD128984 [ gagCATCACCTACGTGTAGCAATTCCAGCTGTTCAACATGAGAAGCACCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTAAAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACATCGCGCTA] consensusID : consensus_7816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCAAAGTTCTTTTGAATCCCGATCATTTTTACTGCACCATCTACAGGTGGCAATGCTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTTCTCAAGTCAGTATACACTTTTTCACTACCGGCACCATACATAATTGATCGNGAATTACATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTTTGTCAACCACTTTGAAATTAGATGCTTTACTGG] [-] EMBL CD065515 [TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATAAGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTCTTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAGTTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGATGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTCACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCAAAGTTC ] [+] EMBL CD066331 [ ggAGGGTGACGCCTCCAGATGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTAACGAATCACATCACCTACGTGTCGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAATTCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAATAACAGTGATACCTAAATCTTCACCATGGGTCTTTTGAATCCCGATCATTTTTACTGCACCATCTACAGGTGGCAATGCTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTTCTCAAGTCAGTATACACTTTTTCACTACCGGCACCATACATAATTGATCGNGAATTACATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTTTGTCAACCACTTTGAAATTAGATGCTTTACTGG] consensusID : consensus_7816#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [ACGGATCAATAGTTAATGGACCATCATAAAGTGCTTCTACTAAGTCTTTGGTAATAGCATTTAGATCTGTATCTTCATTTGGTACTTATTCACAAGGATAAGATATTAGATCAAATATCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTNGTGAAACATCA] [+] EMBL CD111881 [ACGGATCAATAGTTAATGGACCATCATAAAGTGCTTCTACTAAGTCTTTGGTAATAGCATTTAGATCTGTATCTTCATTTGGTACTTATTCACAAGGATAAGATATTAGATCAAATATCTCTACTAAATTCCCGAACAATTTTTTCGACAACACTTTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTTTTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTCGGTATATTGCAGTTTATTCTATAGAATTGTTTTTATACAGAGAGGCCGCAGAGTACTGAACTCGGGTNGTGAAACATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7816#0 TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGAAGTCTTGCCTGCCACCAATA 60 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 TATAGATGGAATTAGACCAGCACGACCATCTTGATTATGATGTCTTGCCTGCCACCAATA 60 consensus_7816#0 AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC 120 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 AGGATCTTCTTGTTTAAGAACTTGAAGGATAGAACCAGCTGAAAATTTTAAACCAGCTTC 120 consensus_7816#0 TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAGG 180 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 TTTGCACGGAATCAAATTATCATTTTTCGGATCATACGAAAAGTGAGCTCGAAGAAAAAG 180 consensus_7816#0 TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA 240 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 TTGGGAAGAAATAGGAGTTGATTGGTAACCAGGAATGATTTTCAGTGTGACGTTTCCAGA 240 consensus_7816#0 TGCATTTTTTAATACTTTCTGTAATACTTCAGGATTATCAACTGGAACTCCATTTGCTTC 300 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 TGCATTTTTTAATACTTTCTGTAATACCTCAGGATTATCAACTGGAACTCCATTTGCTTC 300 consensus_7816#0 ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT 360 consensus_7816#2 ACGGATCA-ATAGTTAATGGACCATCA-TAAAGTGCTTCTAC-TAAGTCTTTGGTAATAG 57 consensus_7816#1 ACGAATCACATCACCTACGTGTAGCAAATCCAGCTGTTCAACATGAGAAGCAGCTAAAAT 360 *** **** ** * * * * ** *** ** * ** * *** * consensus_7816#0 TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT 420 consensus_7816#2 -CATTTAG--ATCTGTATCTTCATTTGGTACTTATTCACAAGGATA---AGATATTAGAT 111 consensus_7816#1 TCGTTTAATTACCAGTTCCTTCACTAAACCATAATGTGCAGACATATATTGTTGTTGAAT 420 * **** * * ** ***** * * ** ** *** * * ** ** consensus_7816#0 AACAGTGAAACCT-----AATACTAAATTCCC---GAA---CAATTTTTTCGACAACACT 469 consensus_7816#2 CA----AATATCT-----C-TACTAAATTCCC---GAA---CAATTTTTTCGACAACACT 155 consensus_7816#1 AACAGTGATACCTAAATCTTCACCAAAGTTCTTTTGAATCCCGATCATTTTTACTGCACC 480 * * * ** ** *** * * *** * ** *** ** *** consensus_7816#0 TTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTT 529 consensus_7816#2 TTGTGGAGTTCAGAAGCATCTTGATCGTTGAAGTGTTTTTTAATATTTTTCTTGACCTTT 215 consensus_7816#1 ATCTACAGGTGGCAATG--CTGGACCATCGCCACCTCCAGTAAGTGTAGCTTCTTTTTTT 538 * * ** * ** ** ** * * * * *** * * *** consensus_7816#0 TTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTC 589 consensus_7816#2 TTGAGGGCGGCTACTGAATGTCTTTGCTTCATGACAAAACTGAAGATAGCTCTGGACGTC 275 consensus_7816#1 CTCAAGTCAGT--ATACACTTTTTCACTAC-CGGCACCATACATAATTGATCGNGAATTA 595 * * * * * * * * ** ** * * ** * * ** * ** ** * consensus_7816#0 GGTATATTGCAGTTTATTCTATAG-AATTGTTTTTATACAGAGAGGCCGCAGAGTACTGA 648 consensus_7816#2 GGTATATTGCAGTTTATTCTATAG-AATTGTTTTTATACAGAGAGGCCGCAGAGTACTGA 334 consensus_7816#1 CATAGTTCATTGGGAATTCCATTTCGATCATCTTTAAAAACGGCCATCCCCCAAAACTTT 655 ** * * **** ** ** * **** * * * * * * *** consensus_7816#0 ACTCGGGTGTTGAACAATCATGCATAACCTGCACAAAAGTAAAAATATAAAAGCTCTGTA 708 consensus_7816#2 ACTCGGGTNGTGAAACATCA---------------------------------------- 354 consensus_7816#1 TGTCAACCACTTTGAAATTAGATGCTTTACTGG--------------------------- 688 ** * ** * consensus_7816#0 AAGTTTCCTTTAGCATGAGGTAAGAAAAGCATACTTCAAGTTTCTACCGAACACCAAACA 768 consensus_7816#2 ------------------------------------------------------------ consensus_7816#1 ------------------------------------------------------------ consensus_7816#0 TCGCGCTA 776 consensus_7816#2 -------- consensus_7816#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||