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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1339 fasta sequence
[CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGC-TGTGAGTAGATAATTTTTCTC-AAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAA-GACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTAATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTATTTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGAAAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAATGAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATCATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCAATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATTAAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATGCGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATTTGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACACCAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACCTGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAATTCCCCCGCTATTACCATT]
[+] EMBL CD074810 [CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGC TGTGAGTAGATAATTTTTCTC AAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAA GACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTAATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAA ]
[-] EMBL SM036 [ AGTTGACAGCTTGTGAGTAGATAATTTTTCTCAAAAAACAGTAG TTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAA GAAAATGAATCTTTTTTAGAGGAAAVGACTAAATTACAATGGTAGTTAAGGAAATA ]
[+] EMBL CD156879 [ AATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGTAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATTAAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTATTTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGAAAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAATGAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGC ]
[-] EMBL CD167760 [ TATTGAATGAATGAATGAACACACAATAACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATCATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCAATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATTAAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATGCGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATTTGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACACCAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACCTGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAATTCCCCCGCTATTACCATT]
consensusID : consensus_7842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTTTCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNNNNNNNNNNNNNNNNNNNTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGAAACATAATCAAAAATATAGCTATCATAACTAATTAGAA]
[-] EMBL CD080984 [AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTTTCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAGTAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATACTAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNNNNNNNNNNNNNNNNNNNTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTACTTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGAAAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAACTGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAAGAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGGAAACATAATCAAAAATATAGCTATCATAACTAATTAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7842#0 CAATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTT 60
consensus_7842#1 -AATAATTTTAATAATAACAGAGATAAATAGGAAGTTGACAGCTGTGAGTAGATAATTTT 59
***********************************************************
consensus_7842#0 TCTCAAAAACAGTAGTTTTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAG 120
consensus_7842#1 TCTCAAAAACAGTANNNNTTGTCACTTGTGCGTGAGTGTAATCAATTATCATTTAATGAG 119
************** ******************************************
consensus_7842#0 TAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATAC 180
consensus_7842#1 TAAGGAAAATGAATCTTTTTTAGAGGAAAGACTAAATTACAATGGTAGTTAAGGAAATAC 179
************************************************************
consensus_7842#0 TAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGGTA 240
consensus_7842#1 TAAGAATATAAATATAAACAAAATAACCCGAAAGCAAAAAGATAAAGCTTAGTGTCGNNN 239
*********************************************************
consensus_7842#0 ATGATGCTATTGTTACTGTGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTAC 300
consensus_7842#1 NNNNNNNNNNNNNNNNN-TGTGTGTATGTTCAGAACAAAGTTCCATGAAGAATGCCTTAC 298
******************************************
consensus_7842#0 TTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGA 360
consensus_7842#1 TTCTCTACAAGGGGTAACAGGCGCAAGTGTGTGTGTCGATTCATGCACCCATCAAGATGA 358
************************************************************
consensus_7842#0 AAATATTAGACACAAAAGTGAAAGAATAATAAAACTGACAACACAAACAATGAGTAAAAC 420
consensus_7842#1 AAATATTAGACACAAAAGTGAAAGAATANNNNNNNNNNNNNNNNNNNNNNNNAGTAAAAC 418
**************************** ********
consensus_7842#0 TGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAA 480
consensus_7842#1 TGTCTAGAGATTACGATTCGATGGAAGTAAAGTAAAGAAAGAAGTTATACAGAAACGAAA 478
************************************************************
consensus_7842#0 GAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGG 540
consensus_7842#1 GAGTCGGAATACGATTAAGTAAATTGAAGATGAGGAGAAACTGAATTGAAAAACGGCTGG 538
************************************************************
consensus_7842#0 TAAAACAAAAACAAACAAACGCGGGAAACATAATCAAAAATATAGCTATCATAACTAATT 600
consensus_7842#1 -------------------------AAACATAATCAAAAATATAGCTATCATAACTAATT 573
***********************************
consensus_7842#0 AAAATAATGATATTATATTTCTATTATTGTTATTATTATTATCACTGACAAAGATTTTAT 660
consensus_7842#1 AGAA-------------------------------------------------------- 577
* **
consensus_7842#0 TTCGAAAGTAATAAAAATTAATTTTACCACCTGTGAGCAGATTGTTTGAAAATAGGAGGA 720
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 AAAGTAAATAAATGAACAAAAATTATCTTTGCATTGATTGCATAACACGTATATCAAAAT 780
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 GAATCAAAATTAAATAATTAAAGCACAAAGCTCTATTGAATGAATGAATGAACACACAAT 840
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 AACGATAACATGAAAATTGAGCTAAGTAGAACATATTTATAGTCAAAGCATTTTACTATC 900
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 ATTTAAACAATAGGACGAATTATTTAAAAAAAACGTTGTTGATGATTATCATAGGATTCA 960
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 ATTAGATGCTCTTCAAAACAAATAAACCTTGAAGGTGGATTTACATGATGAGAATTGATT 1020
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 AAAGGGATGTAAGGAGTTTTGTTGAATGGAGATAACCGGGTAGCGGATCGATGTCTTATG 1080
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 CGTCCGGAATTCTTAGGCCCAGATTATTTCAGTAATCATTTTCAACATATGCGATCAATT 1140
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 TGTTGAATGAAATCACACCACAAACATTTTTACTACAACGACCGTGATACCATTGAACAC 1200
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 CAATATTTACTTCACCACCTGTGTTATTATTCACCTTTGGTTTTCGTGTACATACTGACC 1260
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 TGTATCGTGGATTGTTACATTGACTTGACCTAGGTTTTCTAAGTTTAGGACCAGCTGAAA 1320
consensus_7842#1 ------------------------------------------------------------
consensus_7842#0 TTCCCCCGCTATTACCATT 1339
consensus_7842#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||