cluster # 7865

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7865 cluster # 7865 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7865#0 length = 407 sequences # 4

consensus_7865#1 length = 263 sequences # 1

consensusID : consensus_7865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 407
fasta sequence

                              [ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATTCAATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG-AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA-CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG]

[-] EMBL AA559399             [ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATTCAATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAANCAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTT                                                                                                                                                                                               ]
[+] EMBL CD135231             [                                          ATTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAACTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG]
[-] EMBL CD135233             [                                           TTCTCTATAATATATTTCAGTGCTTTAGGGTCAGGGTTCAAG AATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCTTAC                                                                                                                                     ]
[-] EMBL CD146068             [                                                                            GGGTTCAAGAAATTTTAGACTTTCTTCAGAGTTGGAAGCTTNTGGAAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAA CAAAGCAGTAGCGATTGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAA          ]




>consensus_7865#0
ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATTCAATTCTCTATAATATATTT
CAGTGCTTTAGGGTCAGGGTTCAAGAATTTTAGACCTTCTTCAGAGTTGGAAGCTTTTGG
AAGTCTATACTTATTGATGTCAGAGACATAAAATGCTGCAGCGAACAAAGCAGTAGCGAT
TGTAGCGCTAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTCAGA
CCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAAACGCATGGGCAC
ATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGGTGTCTTTGTAAC
AAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG

consensusID : consensus_7865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATATTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAGCTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAAGCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTTCAGCACGTGCCGAA]

[-] EMBL AA559750             [CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATATTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAGCTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAAGCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTTGTGCAATTTCAGCACGTGCCGAA]




>consensus_7865#1
CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATA
TTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAG
CTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAA
GCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTT
GTGCAATTTCAGCACGTGCCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7865#0      -ATGAAATGTATTTACGCACATTTAAACATCTACCGGAATT-CAATTCT-CTATAATATA 57
consensus_7865#1      CATGAAATGTATTTACGCACATTTAAACANNTACCGGAATTTCAATTNTTNTATAATATA 60
                       ****************************  ********** ***** *  *********

consensus_7865#0      TTTC-AGTGCTTTAGGGTCAGGG--TTCAAGAATTTTAGACCTTCTTC-AGAGTTGGAAG 113
consensus_7865#1      TTTCCAGTGCTTTAGGGTCCAGGGTTTCAAGAATTTTAGACCTNNTTNCAGAGTTGGAAG 120
                      **** **************  **  ******************  **  ***********

consensus_7865#0      CTTTTGGAAGT-CTATACTTATTGATGT-CAGAGA-CATAAAATGCTGCAGCGAA-CAAA 169
consensus_7865#1      CTTTTGGAAGNTNTATACTTATTGATGTTCAGAGAACATAAAATGCTGCAGCGAAACAAA 180
                      **********   *************** ****** ******************* ****

consensus_7865#0      GCAGTAGCGATTGTAGCGCTAA-CTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTT 228
consensus_7865#1      GCAGTAGCGATTGTAGCGCTAAACTATGAAAAATTTATTATAAAGCTTATTGTGCTGTTT 240
                      ********************** *************************************

consensus_7865#0      GTGCAATTCAGACCAACTTCCTTGAGGAATTTGAAGTTCATCATACGTCCCCGCTGGAAA 288
consensus_7865#1      GTGCAATTTCAGC--ACGTGCCGAA----------------------------------- 263
                      ********    *  ** * *   *                                   

consensus_7865#0      ACGCATGGGCACATGGTTCCTGACGTGATTTACCCGGCTAATACTTAGCAGATTATTAGG 348
consensus_7865#1      ------------------------------------------------------------
                                                                                  

consensus_7865#0      TGTCTTTGTAACAAAACGACTGATCATCTTGGGTTTATAATACCGCCAAGCGTTACACG 407
consensus_7865#1      -----------------------------------------------------------