These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGATTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAGTTAATGTGGAATGTACAGACTCTGTAGATCGGAGTTCATCATCACATACTGCCTGTTCCATCAGGACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGGAATCTCTTCGTCAGATTACCGCTGCTCAAGCTGAATGTGTTAGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGATATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCCTAATGAACCAGGTCGTCTGATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCACAAATCTTTA] [+] EMBL AI977282 [AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGATTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAGTTAATGTGGAATGTACAGACTCTGTAGATCGGAGTTCATCATCACATACTGCCTGTTCCATCAGGACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGG ] [+] EMBL BF936257 [ GACGAAAGCACAAGAGTTATTTATAACAGATAATAAATCTGATTCCCAGGCACTCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAACTTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGAAATGAATTATCTTGAAACGCTCTCTGGTTCAATGCAACATATTGCTGATATGGAATCTCTTCGTCAGATTACCGCTGCTCAAGCTGAATGTGTTAGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGATATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCCTAATGAACCAGGTCGTCTGATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCACAAATCTTTA] consensusID : consensus_7868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [CATTGTCCGAGCAGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCCTAGATTGTAAAGCCGGTGTGGTTTCAACTCCAATATCAAGTTTTGGAAGACAATAATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAGTAAATTTGGTGTACACTTCTCATTGTATCGATTTGGTATTAACTTATAATTATTGCCAAAAGAAGTGTTGGAATG] [+] EMBL CD195436 [CATTGTCCGAGCAGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCG ] [+] EMBL CD116038 [ AGTAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTTTGCCCAATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTAGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCCTAGATTGTAAAGCCGGTGTGGTTTCAACTCCAATATCAAGTTTTGGAAGACAATAATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAGTAAATTTGGTGTACACTTCTCATTGTATCGATTTGGTATTAACTTATAATTATTGCCAAAAGAAGTGTTGGAATG] consensusID : consensus_7868#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GCTCAGAATTAGTTNTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCATAAATCTTTAAATGGATCTATTTCAGAATCCAGTGTAAACAAACAACAATTTTCCACAGGAAGCGATAAAACACTTTCA] [-] EMBL CD115205 [GCTCAGAATTAGTTNTGTCATCACCGGGCTCTTCTAAACCAAGTTCATCACTATATTGTGAATAACTGGAACGTTGACAAACCGGTAAGTGAGAATTCGATCTCCAATGTTTAGAGTTGCTATTCTTCGACCAATGACTAGGTGTTGAATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAACGTTTACTTTGGATTGCGTTCAATGCTTCACGTTCTAAGCGAACAACTTCGACCTCTTCGAGTTCAATATTCTTAGAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGTCGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAATGAAGCAAATGTTCATAAATCTTTAAATGGATCTATTTCAGAATCCAGTGTAAACAAACAACAATTTTCCACAGGAAGCGATAAAACACTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7868#1 ------------------------------------------------------------ consensus_7868#2 ------------------------------------------------------------ consensus_7868#0 AAGTTCACGAAAAGGACTATACAAACAGAAGTAGTTCACTTCATTCTCCTCGAGAGAAGA 60 consensus_7868#1 ----------------------------------------------CATTGTCCGAGCAG 14 consensus_7868#2 ------------------------------------------------------------ consensus_7868#0 TTGATAAAGAATCACTAGTTGTCAAATCGAATGCTCCCGGTAATACCAACATTCAAGCAG 120 consensus_7868#1 TAGAACATTCAGAAGCAGTATTTGAGTTGATTATATTGCATTTTAACAAGCTAGAACTTT 74 consensus_7868#2 ------------------------------------------------------------ consensus_7868#0 TTAATGTGGAATGTACAGACTCT--GTAGATCGGAGTTCATCATCACATACTGCCTGTTC 178 consensus_7868#1 TGCCCA-ATGAAGCTGTAGGAATTCGCTCAGAATTAGTTTTG----TCATCACCGGGCTC 129 consensus_7868#2 -------------------------GCTCAGAATTAGTTNTG----TCATCACCGGGCTC 31 consensus_7868#0 CATCAGGACGAAAGCACAAGAGTT-ATTTATAACAGATAATAAATCTGATTCCCAGGCAC 237 * * ** * * * ** ** *** * consensus_7868#1 TTCTAAACCAAGTTCATCACTATATTG--TGAATAACTGGAACGTTGACAAACCGGTAAG 187 consensus_7868#2 TTCTAAACCAAGTTCATCACTATATTG--TGAATAACTGGAACGTTGACAAACCGGTAAG 89 consensus_7868#0 TCCCTACGAATCATCAAAAGATTAATAATTTTATAAATAAAACTATAAACCCTTCGCAAC 297 * * * * *** * ** * * **** * *** * * * ** consensus_7868#1 TGAGAATTCGATCTCCAATGTTTAGAGTT--GCTATTCTTCGACCAATGACTAGGTGTTG 245 consensus_7868#2 TGAGAATTCGATCTCCAATGTTTAGAGTT--GCTATTCTTCGACCAATGACTAGGTGTTG 147 consensus_7868#0 TTAGGCTAACACCCGCTGCACTTAATCTCCAGTTAGCCGTTGA--AATGAATTA-TCTTG 354 * ** * * * * *** * * ** * * ** ***** * * *** consensus_7868#1 AATATTTCTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAAC 305 consensus_7868#2 AATATTTTTTTGATTCATTATCATTTGATAACTGGGACCGATTTTCATGCAAAGCTAAAC 207 consensus_7868#0 AAACGCTCTCTGGTTCAATGCAACAT-ATTGCTGATATGGAATCTCTTCGTCAGATTACC 413 ** * * ** **** * * * ** *** * ** * ** * ** * * * consensus_7868#1 GTTTACTTTG--GATTGCGTTCAATGCTTCAC----GTTCTAAGCGAACAACTTC--GAC 357 consensus_7868#2 GTTTACTTTG--GATTGCGTTCAATGCTTCAC----GTTCTAAGCGAACAACTTC--GAC 259 consensus_7868#0 GCTGCTCAAGCTGAATGTGTT-AGCCTTGCACAGTTGCTTAAAGCTCGTGAATTGCAGAT 472 * * * ** ** *** * * *** * * **** * ** ** consensus_7868#1 CTCTTCGA-GTTCAATATTCTTA-GAAAGCGCTAAAAGCTCTTCAGCTTTCTTACGCC-T 414 consensus_7868#2 CTCTTCGA-GTTCAATATTCTTA-GAAAGCGCTAAAAGCTGCTGAAGAATTTGATAAGGT 317 consensus_7868#0 ATCATCGAAGATTAGTGATCATGCGTTGGAGAAAGAAACACCAGGTGTATTTGTCAGCCC 532 ** **** * * * * ** * * * * * ** * * * consensus_7868#1 AGATTGTAAAGCCGGTGT---GGTTTCA-ACTCCAAT--ATCAAGTTTTGGAAGACAATA 468 consensus_7868#2 CGAACGTCGTCTTAGTGTAAGGACTTCACACTTGGAT--GCCATTTCTTACTGTTCTACC 375 consensus_7868#0 TAATGAACCAGGTCGTCT---GATTTCTGGCGTACATTCACCACAGTTTGAAAGCGTACT 589 * ** * * *** * ** ** ** * consensus_7868#1 ATTTGAAACTTTGGAAACTCGACTGTTATAATCATCATTTTCAGTGCTTAG----TAAAT 524 consensus_7868#2 GAATCACCATCTGTCGACTCAAATATCACAAATGAAGCA---AATGTTCAT----AAATC 428 consensus_7868#0 AAAAGCTGCTGAAG-AATTTGATAAGGTCGAACGTCGTCTT-AGTGTAAGGACTTCACAC 647 * * * * * * ** * consensus_7868#1 TTGGTGTACACTTCTCATTGT---ATCGATTTG----GTATTAACTTATAATTATTG-CC 576 consensus_7868#2 TTTAAATGGATCTATTTCAGA---ATCCA--------GTGTAAACAAACAACAATTTTCC 477 consensus_7868#0 TTGGATGCCATTTCTTACTGTTCTACCGAATCACCATCTGTCGACTCAAATATCACAAAT 707 ** * * * * * * * * * ** * * consensus_7868#1 AAAAGAAGTGTTGGAATG------ 594 consensus_7868#2 ACAGGAAGCGATAAAACACTTTCA 501 consensus_7868#0 GAAGCAAATGTTCACAAATCTTTA 731 * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||