These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 985 fasta sequence [AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGTGATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGT-AATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCCGTTATCCCCTAGCCTTCTTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTCCTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTTAAATGGGG-TTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD084403 [AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGTGATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGT AATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCC ] [+] EMBL CD078536 [ GATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGTAAATTGTCGGAGAATTTGCAAGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTAGTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACACAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCATCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATATTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTAAAAAAGTGGTATATGTTCCAGTTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAACTCCGTTATCCCCTAGCCTTCTTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTCCTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTTAAATGGGG TTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAA ] [-] EMBL AI976283 [ ACTTTTAGTTCCACAGTTAAATTCAATTCCTTACGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAAACTCGTATAATCCTTATTT AATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATGCAGCTGCATTACCGTACTGCGTA] consensusID : consensus_7878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [CAATGTCAAACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTCCAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACTTCTGAGAGCAC] [-] EMBL CD073003 [CAATGTCAAACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAGAAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTCCAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACT ] [-] EMBL AI067763 [ CCAAAGTTCTACTAATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAGATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAATGCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTATCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAATTTTGTAACGAAGCTTTTACAATAATGTACTTAAATGTTACCATTTTTCCAATTATTTGAAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAAAGTGATAACAACTAATAAACTTCTGAGAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7878#0 AGGTTAATACAGACTTGTCTAAGTTCATCTGTGAATTCAAACAATTCATCGATAAGAAGT 60 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 GATCAGCCAGATTTAAGCAGTTCGCAAGTTAATAAAAATGTAATTGTCGGAGAATTTGCA 120 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 AGAAGGAAGATGGTACAGTCATTGTTAACACTGATACATGTAGTAAAAAGGATTACTTTA 180 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 GTGATTTAAAAAATATATCCAATAAAGACAGTAAAGTGAACTCAATGTTACAAAATGACA 240 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 CAGTTCCTACATTGTCAAATCAAAATCATGTTGATGAATTGGAGCATCGTATTGGTATCA 300 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 TCCCAAAAACAACCATAGATTCTGGTCAAAATGGTCGTACTGTATCGTTTTGTAATAATA 360 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 TTTCTCAGGTAACTAACATTTCCAACTCATCTGAATGTTAAAAAGTGGTATATGTTCCAG 420 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 TTAGTGTATCTCCTTCATCACAAAATGTTCTCTCATTAAATCCGTTATCCCCTAGCCTTC 480 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 TTCTAACCGCACAAATGGCCACAAATCAATTACTTTTAGTTCCACAGTTAAATTCAATTC 540 consensus_7878#1 ------------------------------------------------------------ consensus_7878#0 CTTATGTTACATCATCTTCAGGAAATGTATCAAATAGCTCACTAAACACACCAATGTCAA 600 consensus_7878#1 ---------------------------------------------------CAATGTCAA 9 ********* consensus_7878#0 ACTCGTATAATCCTTATTTAAATGGGGTTTTAAATGTCAGTACAAACAATGGTTCGTCAG 660 consensus_7878#1 ACTCGTATAATCCTTATTTAATGGGGTTTTTAAATGTCAGTACAAACAATGGTTCGTCAG 69 ********************* *** ********************************* consensus_7878#0 AAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTA 720 consensus_7878#1 AAATACTTACAAATTGTGTAACAAAAGAATCAAGTGACTTTCCCTCCCAAAGTTCTACTA 129 ************************************************************ consensus_7878#0 ATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAAACCTCCAG 780 consensus_7878#1 ATGAAAGCGTAACTAATCAAGTTATGAATAATTCATGTAAATATAACTTGAACCCTCCAG 189 **************************************************** ******* consensus_7878#0 ATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAAT 840 consensus_7878#1 ATTAAATCAATGCTTATTCGACCGACCCCTCTATTCCTCTTTGTTCTCTGGAAACAAAAT 249 ************************************************************ consensus_7878#0 GCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTA 900 consensus_7878#1 GCTTTTCTTTAGTTCATAATTTATTTTACTCCCTCGATTTTGTTTATCTTTTCCAAATTA 309 ************************************************************ consensus_7878#0 TCTAGAGTATTAAATATTATTTTGAAACCAAAAAAAAAAA-----AAAAAAAAAAAAAAA 955 consensus_7878#1 TCTAGAGTATTAAATATTATTTTGAAAACAACTTAGTTGTTTTCTAAAGTTATTTAACAA 369 *************************** *** * *** * ** ** consensus_7878#0 ATCCATGCAGCTGCATTACCGTACTGCGTA------------------------------ 985 consensus_7878#1 TTTTGTAACGAAGCTTTTCCA-ATAATGTACTTAAATGTTACCATTTTTCCAATTATTTG 428 * * * ** ** ** * *** consensus_7878#0 ------------------------------------------------------------ consensus_7878#1 AAAGTACTCAAATTTATAGCTTTTAGCACTTGGAAGCTTTGAAAATAGTTTTCGTTAAAA 488 consensus_7878#0 -------------------------------- consensus_7878#1 AGTGATAACAACTAATAAACTTCTGAGAGCAC 520 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||