cluster # 7903

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7903 cluster # 7903 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7903#0 length = 511 sequences # 1
consensus_7903#1 length = 430 sequences # 1

consensus_7903#2 length = 412 sequences # 2
consensus_7903#3 length = 311 sequences # 1

consensusID : consensus_7903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACACAGAAACCATTTTTTAATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCATACAGTTTTTTTAACTTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATACATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATTTATTCGTTTTTGAGACGGAGTTTCGCTTTGTCACTCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGTAGCTGGAATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA]

[+] EMBL CD150583             [GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACACAGAAACCATTTTTTAATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCATACAGTTTTTTTAACTTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATACATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATTTATTCGTTTTTGAGACGGAGTTTCGCTTTGTCACTCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGTAGCTGGAATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA]




>consensus_7903#0
GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACACAG
AAACCATTTTTTAATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCATACAG
TTTTTTTAACTTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATACATTCG
TTTTTAAAAACTAATTTTATTTAATTAATTAATTTATTCGTTTTTGAGACGGAGTTTCGC
TTTGTCACTCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCCGCTTCCT
GGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGTAGCTGGAAT
TACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCG
CCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGNCCC
TCAAAGTGCTGGGATTACAGGCATGAGCCAA

consensusID : consensus_7903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [ATGACATATTTACCACCCCTCAGATATTCTTCAAATCCGTAGTAATCCCCAGACAACTATTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAAATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGAGTCTCACTATGTCACCCAGGCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAACCTCTGTCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACCATAGTTGGTCACACATG]

[-] EMBL CD084707             [ATGACATATTTACCACCCCTCAGATATTCTTCAAATCCGTAGTAATCCCCAGACAACTATTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAAATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGAGTCTCACTATGTCACCCAGGCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAACCTCTGTCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACCATAGTTGGTCACACATG]




>consensus_7903#1
ATGACATATTTACCACCCCTCAGATATTCTTCAAATCCGTAGTAATCCCCAGACAACTAT
TGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAAA
TCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGAG
TCTCACTATGTCACCCAGGCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAACCTCTG
TCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGC
CCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGATGGCGTTTCACCATAGTTG
GTCACACATG

consensusID : consensus_7903#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 412
fasta sequence

                              [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGGTGATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAGNNTCAGGAAAGATACTGTGCCTGGNATGT]

[+] EMBL CD110800             [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGGTGATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAGNNTCAGGAAAGATACTGTGCCTGGNATG ]
[+] EMBL CD111856             [CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGACAACAGGNTGATGGTGNGGAAGAGGTCAGCAGGNAATCATGTGAGCAAGGAACCTGTATCATGAATAAG TTCAGGAAAGATACTGTG CT GNATGT]




>consensus_7903#2
CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAAGCAATTCTCTAGCCTCAGC
CTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGGGCCTGCCCCTCCACCCCTGT
GGGTGTTTCTTGTCAGGTAGAGACAAGAGACTGAGTAAAGAAATAAGACACAGAGACGAA
GTATAGGGAAAGAACAGTGGGCCCAGGGGACCGGCGCTCAACATGCGAGGACCTGCACCG
GCGCTGGTCTCTGAGTTCCCTCAGTATTTATTGATCACTATTTTTACTATCTTGGCGAGG
GGAGTGTGGCAGGACAACAGGGTGATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGC
AAGGAACCTGTATCATGAATAAGNNTCAGGAAAGATACTGTGCCTGGNATGT

consensusID : consensus_7903#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [GGTGAGGGAACGTACAGATAAGCCGATTGAATAGTTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAAACGCTGTGTGCCAGCACAAATTAGATCACTGACACCCATGCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCTGAGACTCCCGGGTTAAAGCTATTATTTTCGCCTGAGACTACCAAGTAGTTGGGATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC]

[+] EMBL CD097736             [GGTGAGGGAACGTACAGATAAGCCGATTGAATAGTTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAAACGCTGTGTGCCAGCACAAATTAGATCACTGACACCCATGCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCTGAGACTCCCGGGTTAAAGCTATTATTTTCGCCTGAGACTACCAAGTAGTTGGGATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC]




>consensus_7903#3
GGTGAGGGAACGTACAGATAAGCCGATTGAATAGTTATGTTGGTAGAAATAACATTGGCA
TTATAATTTGGAAACGCTGTGTGCCAGCACAAATTAGATCACTGACACCCATGCTGGAGT
GCAGGGAAGCAATCTTAGTTCACTGCAATCCTGAGACTCCCGGGTTAAAGCTATTATTTT
CGCCTGAGACTACCAAGTAGTTGGGATCACAGACACTCGCCACCATGCCCAGCTAATTTT
TGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGATGGTCTAGAACTCCTGAC
CTTAAGTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7903#0      --GCTCCATGCATCTTATTAAAGGTGACTGACCCACCACTGAGCTATGGGCTTGCAACAC 58
consensus_7903#3      ------------------------------------------------------------
consensus_7903#1      ATGACATATTTACCACCCCTCAGAT-ATTCTTCAAATCCGTAGTAATCCCCAGACAACTA 59
consensus_7903#2      ------------------------------------------------------------
                                                                                  

consensus_7903#0      AGAAACCATTTTTTA--ATTAGATAATTGATGTTCTCCAGATTCTTCTCTTTCTTGCCAT 116
consensus_7903#3      ------------------------------------------------------------
consensus_7903#1      TTGACCTGCTTTCTGTCATTGAAGATTCATTGGCATTTACTTGAATTTTATAGTAATGAA 119
consensus_7903#2      -------------------CTCAATCTCGGCTCACTGCAACCTCCACCTTCCGGATTCAA 41
                                                                                  

consensus_7903#0      ACAGTTTTTTTAAC-TTTAATTATTTTTGTCATTTACTCACCATCTTCTGTGGCAAATAC 175
consensus_7903#3      ----------------------GGTGAGGGAACGTACAGATAAGCCGAT----TGAATAG 34
consensus_7903#1      ATCATGCAGGGGTCATTTTCCTGTCGCGTCCGTCCTTCCTTCCGTTCCTTCCTTCCTTCC 179
consensus_7903#2      GCAATTCTCTAGCC-TCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCTGAAGGGG 100
                                                                                  

consensus_7903#0      ATTCGTTTTTAAAAACTAATTTTATTTAATTAATTAATT-TATTCGTTTTTGAG-ACGGA 233
consensus_7903#3      TTATGTTGGTAGAAATAACATTGGCATTATAATTTGGAA-ACGCTGTGTGCCAGCACAAA 93
consensus_7903#1      TTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTTCTTTTTCTTTTTTGATATAGA 239
consensus_7903#2      GCCTGCCCCTCCACCCCTGTGGGTGTTTCTTGTCAGGTA------GAGACAAGAGACTGA 154
                               *                *  *                         *   *

consensus_7903#0      GTTTCGCTTTGTCACTCAG-GCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAA-CCT 291
consensus_7903#3      TTAGATCACTGACACCCAT-GCTGGAGTGCAGGGAAGCAATCTTAGTTCACTGCAATCCT 152
consensus_7903#1      GTCTCACTATGTCACCCAG-GCTGGAGCACAGTGGCACAATCTCAGCTCACTGCAA-CCT 297
consensus_7903#2      GTAAAGAAATAAGACACAGAGACGAAGTATAGGGAAAGAACAGTGGGCCCAGGGGA---C 211
                       *       *   ** **  *  * **   ** *     *     *  *   *  *    

consensus_7903#0      CCGCTTCCTGGGTTCAAGCGATTCTCCTGCCTCATGCTTGTAATTCTCTCTCTCCCGAGT 351
consensus_7903#3      GAGACTCCCGGGTTAAAGCTATTATTTT------CGCCTGAGA--------CTACCAAGT 198
consensus_7903#1      CTGTCTCCCAGATTCAAGCAATTCTCCT-------GCCTCAGC--------CTCCTGAGT 342
consensus_7903#2      CGGCGCTCAACATGCGAGGACCTGCACCGGCGCTGGTCTCTGAG------TTCCCTCAGT 265
                        *    *    *   **    *            *  *               *  ***

consensus_7903#0      AGCTGG-AATTACAAGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGA 410
consensus_7903#3      AGTTGG-GATCACAGACACTCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGA 257
consensus_7903#1      AGCTGG-GATTACAGGCGCCCGCCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGA 401
consensus_7903#2      ATTTATTGATCACT-ATTTTTACTATCTTGGCGAGGGGAGTGTGGCAGGAC-AACAGGGT 323
                      *  *    ** **         * * *       *   * * * * *     *  ** * 

consensus_7903#0      TGGGGTTTCGCCAT-GTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCC 469
consensus_7903#3      TGGGGTTTCACCAT-ATTGGCCAGGATGGTCTAGAACTCCTGACCTTAAGTGATC----- 311
consensus_7903#1      TGGCGTTTCACCATAGTTGGTCACACATG------------------------------- 430
consensus_7903#2      GATGGTGTGGAGAAGGTCAGCAGGGTATCATGTGAGCAAGGAACCTGTATCATGAATAAG 383
                          ** *    *   *  *                                        

consensus_7903#0      GCCTCGGNCCCTCAAAGTGCTGGGATTACAGGCATGAGCCAA 511
consensus_7903#3      ------------------------------------------
consensus_7903#1      ------------------------------------------
consensus_7903#2      NNTCAGGAAAGATACTGTGCCTGGNATGT------------- 412