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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence
[GTTTATTGTATATGAAGAAACTAAAATGACTACTAATGGCTAAATAAGTAGTTTAATAAAAATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAAAAAACTGTTAAAACACACATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAATGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTATACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTATTGAGATGAATCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATAATGCAT]
[+] EMBL CD114813 [GTTTATTGTATATGAAGAAACTAAAATGACTACTAATGGCTAAATAAGTAGTTTAATAAAAATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAAAAAACTGTTAAAACACACATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTC ]
[-] EMBL CD140104 [ cTGCAGAAGTATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAATGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTATACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTATTGAGATGAATCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATAATGCAT]
consensusID : consensus_7928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAATATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTCATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTAGCTTTGGTGATTATATGTTGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACTAACAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACAAATAAATCACTTGATATTATCAATACTTC]
[+] EMBL BF936798 [TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAATATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTCATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTAGCTTTGGTGATTATATGTTGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACTAACAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTCTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTGGATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACAAATAAATCACTTGATATTATCAATACTTC]
consensusID : consensus_7928#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTATAACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAGAAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAATACGTTTCCCCTTTTGTACTCGAACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTGTGCCAGTACACCGTGTTCTTACTTCAGAGCCACTAACCGGTCCTAACTGTTGTGTTGTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTAGTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTATACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCATTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATCCACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTGCNTCTGTTCCACGATTTGAAGA]
[+] EMBL CD179111 [CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTATAACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAGAAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAATACGTTTCCCCTTTTGTACTCGAACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTGTGCCAGTACACCGTGTTCTTACTTCAGAGCCACTAACCGGTCCTAACTGTTGTGTTGTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTAGTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTATACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCATTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATCCACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTGCNTCTGTTCCACGATTTGAAGA]
consensusID : consensus_7928#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[TTTTTTTTTTTTTTTTACTGGCACAACAAATATATTTTTGAAATTGAAAGACGCTGTCCGAGCACAAAAGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGGCTTGTTCCTCTTCTTCCAGTGCATTTACTCTTTGTTGCCCACTCGTGGAAGAGAATAGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCTTTTCAAGGGCTACTGCCGGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATACAAAACAACCTTGCTAAAAAAGCGCTTACCGGAATTAATATCTCA]
[+] EMBL AI394973 [TTTTTTTTTTTTTTTTACTGGCACAACAAATATATTTTTGAAATTGAAAGACGCTGTCCGAGCACAAAAGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGGCTTGTTCCTCTTCTTCCAGTGCATTTACTCTTTGTTGCCCACTCGTGGAAGAGAATAGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCTTTTCAAGGGCTACTGCCGGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATACAAAACAACCTTGCTAAAAAAGCGCTTACCGGAATTAATATCTCA]
consensusID : consensus_7928#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[TGTTGTGGGAAAGCTACCAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTGTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCCCCAAATGC]
[-] EMBL CD068986 [TGTTGTGGGAAAGCTACCAAATAGAGAAATGTATCATTGTTTAACTTTAATTTTGTATCTCATCACAAACACTTGGTCAATTTGTCAAAGTAACTGCTGAATGATAACTAGGAGGGCTTGAAATCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTGCAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCCCCAAATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7928#1 TGAGAATTCTATATTGTACCAAAAATATAATATTGAATAAAGGTAATAATAATAAATAAT 60
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 ------------------------------------------------------------
consensus_7928#2 ------------------------------------------------------------
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 ATACAATTTTTCTTCAGTAAACAATTTCATTGTTTGTTTTTCTTGTCAAATTGTCAATTC 120
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 -------------------------------------------------------GTTTA 5
consensus_7928#2 ------------------------------------------------------------
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 ATGTGAAGAAAAAATCTTCGTGCGTGTGTGTGTGCATGCCCTTTCATTCCTCTTTTTTTA 180
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 TTGTATATGAAGAAACTAAA-----ATGACTACTAATGGCTAAATAAGTAGTTTAATAAA 60
consensus_7928#2 ------------------------------------------------------------
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 GCTTTGGTGATTATATGT-TGTTTATTGCTGGGCAGGGGGGGGTTTGTTCTGGGAAAACT 239
consensus_7928#4 ---------------------------------------------TGTTGTGGGAAAGCT 15
consensus_7928#0 AATACGAAAAGAATTTATATGAATATGAATACATGTCAAAACATCAATTACAA-AAAACT 119
consensus_7928#2 ----CGTACATCAGTTATAATATTTTGGATTTTATCTATTATATTTTTAATAATAGGTAT 56
consensus_7928#3 --------------------------------------------TTTTTTTTTTTTTTTT 16
* *
consensus_7928#1 AACAAATAGAGAAATGTATCATTGTTTAACTT------TAATTTTCTATCTCATCACAAA 293
consensus_7928#4 ACCAAATAGAGAAATGTATCATTGTTTAACTT------TAATTTTGTATCTCATCACAAA 69
consensus_7928#0 GTTAAA-ACACACATGTATCATTGTTTAACTT------TAATTTTCTATCTCATCACAAA 172
consensus_7928#2 AACAGTACTATCTATGTATCATAATTTAAATGAGGCAACAAAGAGTAAACGCACTGGAAG 116
consensus_7928#3 ACTGGCACAACAAATATATTTTTG---AAATTG-----AAAGACGCTGTCCGAGCACAAA 68
* ** *** * ** * ** * * **
consensus_7928#1 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 347
consensus_7928#4 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 123
consensus_7928#0 CACTTGGTCAATTTGT---CAAA--GTAACTGCTGAATGATAACTAGGAGGGCTT-GAAA 226
consensus_7928#2 AAGAGGAACAAGCCCTACGCGATCTGCACCTGCAGAACAACGAATGAAACTATTTTGTAA 176
consensus_7928#3 AGAGGAAACTTATTACAAAATAGTTTTATTCGTTGTTCTGCAGGTCTAGATCGCGTAGGG 128
* * * * * *
consensus_7928#1 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 407
consensus_7928#4 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 183
consensus_7928#0 TCCTATACGGAATTGGTGGTAAAGAAGGTTTCGGAAAATCTTCAAATCGTGGAACAGGTG 286
consensus_7928#2 TACGTTTCCCCTTTTGTACTCGA-ACCGCGTCTTTCAATTTCAAAAGCATATATCTGTTG 235
consensus_7928#3 CTTGTTCCTCTTCTTCCAGTGCA----TTTACTCTTTGTTGCCCACTCGTGGAAGAGAAT 184
* * * * * * * * * * * *
consensus_7928#1 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTG 467
consensus_7928#4 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTGCC---CCAAATGC-------- 232
consensus_7928#0 CAGAAGGATATGGAGTAGGTAATGATGATGTTGTCGGTACTGGTTTAAATGGTTGACGTG 346
consensus_7928#2 TGCCAGTACACCGTGTTCTTACTTCAGA-GCCACTA--ACCGGTCCTAACTGTTG-TGTT 291
consensus_7928#3 AGGCCGCCCATCTTCATTCTCCATCCAACTCCACCTGTAGCT-TTTCAAGGGCTACTGCC 243
* * * * **
consensus_7928#1 GATATGGAATTCATTTAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAA 527
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 GATATGGAATATCTTTATAAAATTCTGGATCACGACATCGATAATCTCGTTCATCTTGAA 406
consensus_7928#2 GTTGTTTCAGATCGCTCCTGCTTCCGAGTGGACGTCAATATTGAACGTGCTACATCCTTA 351
consensus_7928#3 GGTCACAAGCCCTGGTAAAGGAAGAGGGCTGAGCATGGGGTCAGTTATACCAACCCATAC 303
consensus_7928#1 TATAATAGATAAAATCCAAAATATTATAACCTGATGTACGAACTCGTCCAACTAATTTCT 587
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 TGGATTCTTGGATAATTAATAATGCACTAGTTAAAAAACCACTACATATAATAAGTGGTA 466
consensus_7928#2 GTGTTGTTCATCTCAATACGCTGGTACTATTGCTGGAACAATTTTTTTTAGTTTTCAGTA 411
consensus_7928#3 AAAACA---ACCTTGCTAAAAAAGCGCT--TACCGGAATTAATATCTCA----------- 347
consensus_7928#1 CAC------GTTTAGTATCTTCTTCAGATGAAGTGACCATTATGCATGCAACAAATCACA 641
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 TACTGAAAAACTAAAAAAATTGTTCCAGCAATAGTACCAGCGTAT-TGAGATGAATCATT 525
consensus_7928#2 TACCACTTATTATATGTAGTGGTTTTTTAACTAGTGCATTATTAATTATCCAAGAATCCA 471
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 AATAAATCACTTGATATTATCAATACTTC------------------------------- 670
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 --TAAATTATGATACATAGATAGTACTGTTATACCTATTATTAAAAATATAATAGATAAA 583
consensus_7928#2 TTCAAGATGAACGAGATTATCGATGTCGTGATCCAGAATTTTATAAAGATATTTCATATC 531
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 ------------------------------------------------------------
consensus_7928#4 ------------------------------------------------------------
consensus_7928#0 ATCCAAAATATTATAACTGATGTACGAACTCGTCCAACTAATTTCTCACGTTTAGTATCT 643
consensus_7928#2 CACGTCAACCATTTANACCAGTACCNGACACATCATCATTACCTACTCCATATCCTTCTG 591
consensus_7928#3 ------------------------------------------------------------
consensus_7928#1 ---------------------------
consensus_7928#4 ---------------------------
consensus_7928#0 TCTTCAGATGAAGTGACCATAATGCAT 670
consensus_7928#2 CNTCTGTTCCACGATTTGAAGA----- 613
consensus_7928#3 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||