These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 894 fasta sequence [GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAGAAGAGTCAAGACTTCCAGTTTTCTTTGAAAGATTTACTGAGATACTATCACTGAAATTTTGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTGATTGGTAAAGAAACTCAGTATACATTTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGAAAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTTAACATCTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGTAGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTCCACCCACCCTCC] [+] EMBL CD081675 [GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAGAAGAGTCAAGACTTCCAGTTTTCTTTGAAAGATTTACTGAGATACTATCACTGAAATTTTGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTGATTGGTAAAGAAACTCAGTATACATTTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGAAAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTTAACATCTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGTAGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTNTACGTCCACCCACCCTCC] [-] EMBL CD076395 [ TATATTATACATTACATAATTATACTTATCCATTTGAATTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAATTGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCTTCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTC ] [+] EMBL CD131698 [ TATGAATGTCAACGTTATCTTAGTCAAAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCATTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATAAATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACATAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTCTTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTTTTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTT ] consensusID : consensus_7944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACTTGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTGGAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGACATTGTTGGATAGAGAATACTGGTGTGTGGCCTATGCTTAAGTAAGATCTGTGATACGTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGATAAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTTGAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAATATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTTTTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC] [+] EMBL CD067022 [GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACTTGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTGGAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGACATTGTTGGATAGAGAATACTGGTGTGTGGCCTATGCTTAAGTAAGATCTGTGATACGTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGATAAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTTGAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAATATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTTTTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC] consensusID : consensus_7944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TTTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCNCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTG] [+] EMBL AI394933 [TTTTTTTTTTTTTTTTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCNCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTG] consensusID : consensus_7944#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence [CTATCAATCTGTCAATCCTCACAGTGTCCGGGCCATGGAATAATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTCGGATCCCGATGAGTCATGGGT] [+] EMBL CD062576 [CTATCAATCTGTCAATCCTCACAGTGTCCGGGCCATGGAATAATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTCGGATCCCGATGAGTCATGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7944#1 -----------GGAAGTGGATCGGACACAAATTAAGGAAATCACGAGGCAATCCCTAACT 49 consensus_7944#2 ----------------------------------------------TTTTTTTTTTTTTT 14 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 GGGCCATATTCGGCACGAGGCAACAAACCAATAAAGAATTTCAAGCTGAACGACTTTTAG 60 consensus_7944#1 TGGAATGGTGAAGAGAAGAGGAAAAGAGGAAGGCCAAAGAACACATTACTCTGGGAACTG 109 consensus_7944#2 TTTTCTCGTAATGACTCTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATAAATAA 74 consensus_7944#3 ----------------------------------CTATCAATCTGTCAATCCTCACAGTG 26 consensus_7944#0 AAGAGTCAAGACTTCCAGTTTTCTTT-GAAAGATTTACTGAGATACTATCACTGAAATTT 119 * * * consensus_7944#1 GAAGCAGATATGAAAAGGATGAATTTTAACTAGAACGAACTTGAAAGGATTGCCCAGGAC 169 consensus_7944#2 TTTGTATTTATTAAATG--TAATGTATAAATAGGGTTATGTTATTACCATTATTATTATT 132 consensus_7944#3 TCCG-GGCCATGGAATA-ATGAAATAGGACTTCGGTTCTATTTTGTTGGTTTTC--GGAT 82 consensus_7944#0 TGGGAAGTCTTAGTCAGCCATCCATTTTATGTGATTACTGTCCGACAGATTGCAGCTTTG 179 * * * * * ** consensus_7944#1 ATTGTTGGATAG--AGAATACTGGTGTGTGGCCTATGCTTA--AGTAAGATCTGTGATAC 225 consensus_7944#2 ATTATTATTATA--ACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATC 190 consensus_7944#3 CCCGATGAGTCA--TGGGT----------------------------------------- 99 consensus_7944#0 ATTGGTAAAGAAACTCAGTATACAT-TTTTTCCTATGGCTGTTCGAGCTGTTTACCGTGA 238 * * consensus_7944#1 GTTTCTCTTATCAAAAGATGAAAATATTTTACAACCGGAAAATATTGATAAACTTGGGAT 285 consensus_7944#2 ATTTTTCATGTTG--------------TTTGCATTTGTATTTTATTCACCTATGTTTACC 236 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 AAATGGTATTTTAGGATTTTTCCAGGGTTTTATACCACGTTTAATTGGTGAAATTATTTT 298 consensus_7944#1 AAGATGTTAAAGAATTAATGCTATTTATTTAAACATCACTTTGTAAATTGAAATATTGTT 345 consensus_7944#2 AATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTC-TTCGCCATGTTGTGGTATAGTT 295 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 AACAT--CTGCTTATTATTGTTCTTGTCGTCTGGTCAGATTATTAATATTTGGATTAGGT 356 consensus_7944#1 GAAAAAAATATTCTAAACTTTCTTAGATTAGTTAAAAATTTCTCTTTTATGTAAATTCAA 405 consensus_7944#2 TGTGGTTCTTCTGGATGTGGTGTTGGTGTGGTTTTGTACCTAT-TTCCATATTTTTTATA 354 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 AGAAGATCTACTGAAAATATGAACATCTTACGTGTGTTATTATATTATACATTACATAAT 416 consensus_7944#1 TATTCCTATCAAAGGAAAATTCAAACATAAAATGCTATCCATAACTAGAATTCCTATCTT 465 consensus_7944#2 CTTTCCTTTTCNC------CTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGT 408 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 TATACTTATCCATTTGAA-TTAACTGGATGTATTATGGCTGTACATGGTGCAAATTTAAT 475 consensus_7944#1 TTGCTTTTCAAGATTTTCTCTCACTAATGAACTCCAAGCCCTCAAATGC----------- 514 consensus_7944#2 TC-CTTTCTTGGATGATTTTG--------------------------------------- 428 consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 TGGTGCTACTGAATCAAATTCTTTTCATAATTGGTATGAATGTCAACGTTATCTTAGTCA 535 consensus_7944#1 ------------------------------------------------------------ consensus_7944#2 ------------------------------------------------------------ consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 AAATCAACAAACCATACGTGGTTGGCGTCCATTTCTACGAAGTCATGTTCAACAAATCCA 595 consensus_7944#1 ------------------------------------------------------------ consensus_7944#2 ------------------------------------------------------------ consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 TTTACCAAAATTAAAAAGCTAGTTATGCTAACAAGGTATGGCAACTTGGACCGATGTATA 655 consensus_7944#1 ------------------------------------------------------------ consensus_7944#2 ------------------------------------------------------------ consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 AATGTGCCTGATCCTACGTTGTAGCTGACTGACTGAGTTTAATGAATTTATATTTATACA 715 consensus_7944#1 ------------------------------------------------------------ consensus_7944#2 ------------------------------------------------------------ consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 TAAATAATCTGTATAAAAACAAACAACCATCTTACGCTTAGGTCACATTGGCATTTGTTC 775 consensus_7944#1 ------------------------------------------------------------ consensus_7944#2 ------------------------------------------------------------ consensus_7944#3 ------------------------------------------------------------ consensus_7944#0 TTCACTCTTCTAGTCAATGTAATTCTGTATAGTTTCCATATACATTTTGTTGTTGTTGTT 835 consensus_7944#1 ----------------------------------------------------------- consensus_7944#2 ----------------------------------------------------------- consensus_7944#3 ----------------------------------------------------------- consensus_7944#0 TTTAAATGAGTAAAGCTTGTAGCTGTGATTAAATTAAATTTTACGTCCACCCACCCTCC 894 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||