These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 996 fasta sequence [AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTTCACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATGTGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTATTGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTCTTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTTAACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACTACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAGCTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGAAACTTGCAAGTAAGAATAAAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACAGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAAATATTCCGAAGTAGGGTTT] [+] EMBL CD159383 [AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTTCACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATGTGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTATTGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTCTTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATT ] [-] EMBL SMAA14064 [ TTTCCTGGGGTTTACTGTCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTAGAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAGACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAAAAACATAGCCAGGGTATATATAT ] [+] EMBL CD179194 [ tccTTTTTTTCTCTCTTCCAACTGTAATGCAATAAACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTTAACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACTACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAGCTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGAAACTTGCAAGTAAGAATAAAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTC ] [+] EMBL CD166424 [ AAACAATCGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACAGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAAATATTCCGAAGTAGGGTTT] consensusID : consensus_7948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [AAACATTTGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAAAATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAAATATCCCGAAGTAGGGTTT] [+] EMBL CD166380 [AAACATTTGGGACAACTAAGAGGAATTTCTTCGTCGGTGAAAATTGTTCACCATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGATCTAATGTTTCATACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATTGTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAAAATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAAATATCCCGAAGTAGGGTTT] consensusID : consensus_7948#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CTACTATCTGAGATGCAAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGAACATGGGTCACATATATTTTGGCTGATTCTGGATAGATGCACGTTCAATTCACTAAGATGTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCCTTTCACAAATAATCCGTATGTATCTGATCTGTCACACATGCGAGTACAGGCAGTCCGTATTTAAACATTTAGAATCTAAGGTGAAACTC] [+] EMBL AI390063 [CTACTATCTGAGATGCAAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGAACATGGGTCACATATATTTTGGCTGATTCTGGATAGATGCACGTTCAATTCACTAAGATGTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCCTTTCACAAATAATCCGTATGTATCTGATCTGTCACACATGCGAGTACAGGCAGTCCGTATTTAAACATTTAGAATCTAAGGTGAAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7948#0 AATCAATAACTTAATGGATGGACATAATGTAAAACACCTAGGAGTTAAAATACTACTTTT 60 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 CACCGACGAATACAATTAAGTTACGGAGTTACATATTGACTCTTTTCCTGGGGTTAACTG 120 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 TCACTGATCGCATTTCATGAAACTATTATACTAATGATAATAATAACTGTATTCCAATTA 180 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 GAAGTGAATTTGATACAAAGATAGAAAGGAAAAAACACATCCACAGCTTAGTATAAAGAG 240 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 ACAAATATTAATTCAGAACGTGAAAAATGATAGTAAAAAAAATATTTTTTTAAGGTAGAA 300 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 AAACATAGCCAGGGTATATATATCGAAAGAACAATTCTTTTTGGTAAGAGATTACATATG 360 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 TGTATGTAGGGAAGGTTGAACACAATATCACAAAGCAAAAAAAGGGAAGTCAACAATTAT 420 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 TGTCTGGTATCTGTGCACTTTTTGAAACGGAAGGGGTGAGATGTCCTTTTTTTTTCTCTC 480 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 TTCCAACTGTAATGCAATANACCGAATACAGAGGAAGAAATAAAACACCGAATTTAATTT 540 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 AACTGTTACCATCATTAGGTTTGTTAATATAAGGATGTGAGCATAAGAAAAAATGGGACT 600 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 ACCAACGATTGATACCAAAAAAGCGAACCCTATAAAACTGAGGCAATTTAGGAAGTACAG 660 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 ------------------------------------------------------------ consensus_7948#0 CTAGAACAATCATTGACGATGCGTTGATAAAACAATGAAGAGGGTCGTATTCTGTGTAGA 720 consensus_7948#1 ------------------------------------------------------------ consensus_7948#2 --------------------------------------------CTACTATCTGAGATGC 16 consensus_7948#0 AACTTGCAAGTAAGAATAAAACAATCGGGAC--AACTAAGAGGAATTTCTTCGTCGGTGA 778 consensus_7948#1 ------------------AAACATTTGGGAC--AACTAAGAGGAATTTCTTCGTCGGTGA 40 consensus_7948#2 AAGTTGGGACTGCAACGTACGGTTCTAAACCCTACTTCGGAATAATTGAATAGTCAAGGA 76 * * * * ** **** * *** ** consensus_7948#0 AAATTGTTCAC-CATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGAT 837 consensus_7948#1 AAATTGTTCAC-CATCGTCAAACTGTTCCCATTGAGTGAGAACACGAGATTCTCCTTGAT 99 consensus_7948#2 ACATGGGTCACATATATTTTGGCTGATTCTGGATAG-ATGCACGTTCAATTCACTAAGAT 135 * ** * **** ** * *** * * ** * ** **** * *** consensus_7948#0 CTAATG-TTTCAT-ACGGACTGCCTTTCTCCCAGTGTAACGATCGATACATAACGATATT 895 consensus_7948#1 CTAATG-TTTCAT-ACGGACTGCCTTTCTCCCAGTGTAACAATCGATACATAACGATATT 157 consensus_7948#2 GTTCCAACTCCATCAAGCATCCGCCTGTTCTGTTTGTGACCGTTAACATGTACCC-TTTC 194 * * *** * * * * * ** *** ** * * * ** * * * consensus_7948#0 GTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTAC---------------------- 933 consensus_7948#1 GTGAAAGGTACATGTTAACGTCCAAACAACAGCGGTACTGAGGAGTGGAACACATAGTAA 217 consensus_7948#2 ACAAATAATCCGTAT--GTATCTGATCTGTCACA-------------------------- 226 ** * * * * ** * * * consensus_7948#0 ----------------AGAATCACCAAAATATATGTGACCCATGTTCCTTGACTATTCAA 977 consensus_7948#1 AATGAAGTGCACTACCAGAATCACCAAAATATATGTGACCCATGTTCCCTGACTATTCAA 277 consensus_7948#2 ---------------------CATGCGAGTACAGGCAGTCCGTATT---TAAACATTTAG 262 ** * ** * * ** * ** * * *** * consensus_7948#0 ATATTCCGAAGTAGGGTTT 996 consensus_7948#1 ATATCCCGAAGTAGGGTTT 296 consensus_7948#2 A--ATCTAAGGTGAAACTC 279 * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||