These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 621 fasta sequence [AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCTGGGAGC-ATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGAAACGAATNGTT] [+] EMBL CD141941 [AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACCTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGATTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCTGGGAGC ATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGAAACGAATNGTT] [-] EMBL CD062365 [ CTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAAATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCGAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAG ] [-] EMBL AW017132 [ AACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGGCATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGCCAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACTTAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAACGTCAACACATTTAGTAATATGTTTCTGGATTCCATAATTGATAGGAATCTTCCGTTTCCCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATGGCTCCGCTGAATGAGCCAAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTTCGGAATCGGCACAGAACGGAGCATATCT GGAGCAATATCACATACTATAGTATGCAAGACATTCATTTTGGTCCAATATACTGACTGAATAAGTGTTAGTGAGACAAACTGATGCGTATCACCCAAACCCGA ] consensusID : consensus_7984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGATAGTTTCATAGCTGATAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCTGTGAGATCTGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGTAATTAAACTACTCGTAATCATGTTCCTTTTCATTGTGAGCTTTATTTTGACCCTTGAACTATTATTGTACGATTTTCCATTCTTGAGTTATACCCAGTCTATTAATTACTGCTCTCCCTATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTATTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGATTCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCTAGGCGGAAGCAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAATAATTCGCTACT] [+] EMBL CD202049 [GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGATAGTTTCATAGCTGATAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCTGTGAGATCTGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGTAATTAAACTACTCGTAATCATGTTCCTTTTCATTGTGAGCTTTATTTTGACCCTTGAACTATTATTGTACGATTTTCCATTCTTGAGTTATACCCAGTCTATTAATTACTGCTCTCCCTATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTATTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGATTCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCTAGGCGGAAGCAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAATAATTCGCTACT] consensusID : consensus_7984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGACGGACTCGGGGCTGGCTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGGCAGTCATTTTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGGACCCGACCGATAATGATCGTTCCGTACGGGGTGATATAGCAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGACTAGGTGTTT] [+] EMBL CD136791 [TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGACGGACTCGGGGCTGGCTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGGCAGTCATTTTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGGACCCGACCGATAATGATCGTTCCGTACGGGGTGATATAGCAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGACTAGGTGTTT] consensusID : consensus_7984#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [CCAGGACGCGCACTTCATCCTATTTGGGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACTCAGTACTGTTCGCTTCAAACGCCATCGCGTACATATATGAATTTCATTATTTTATGAAATTTATTTTCATCCCGTGTTATATCTTGTGGCCGAGTGGATGCCCAGTTAATGTATGACGTGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTACGTATCGGTC] [+] EMBL CD130366 [CCAGGACGCGCACTTCATCCTATTTGGGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACTCAGTACTGTTCGCTTCAAACGCCATCGCGTACATATATGAATTTCATTATTTTATGAAATTTATTTTCATCCCGTGTTATATCTTGTGGCCGAGTGGATGCCCAGTTAATGTATGACGTGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTACGTATCGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7984#2 --------TGTAAGACACGTGCACTATGCCGACGCGGCTGCGTCTGTGCATTAATGTGAC 52 consensus_7984#3 --------------------------------CCAGGACGCGCACTTCATCCTATTTG-- 26 consensus_7984#1 -------GATAGATTTGCCTTTTGTATTTTAATCTTTTACATTGAGTTATTATACGCAGA 53 consensus_7984#0 AAAATGCTGTTACGTTTAATATATTAAACCGTTCTTTTAAAAACCAAATTCGAACTGGAA 60 * consensus_7984#2 GGACTCGG-GGCTGG--CTGTTGGTTTATCACAGATCATGCTCTGACCAAAGCAGCGTGG 109 consensus_7984#3 GGACTCGTCAGCTGGATTTGTCCGCATCTCAGAGTTGATGTTCACTCTGAGACTCGGACT 86 consensus_7984#1 TAGTTTCATAGCTGA--TAGTTGTACTGTTATATCCCGATATCAATAATGAATGGTAGCT 111 consensus_7984#0 ATAAAACACAGTTTAGGTAACTACAAAATTACAGCTATGATTACGGGGCAAGCAAGAAGG 120 * * * * * * consensus_7984#2 CAGTCATT-TTTGCGCTACAGGCGTCCAGAGGCACTAGCTGAGCGGGACGTCGATTTGG- 167 consensus_7984#3 CAGTACTG-TTCGCTTCAAACGCCATCGCGTACA-TATATGAATTTCATTATTTTATGA- 143 consensus_7984#1 GTGAGATC-TGTGTATGAAACAATATTATGCATATAATGTTTATCGTATACTTTCTAAGT 170 consensus_7984#0 CATTGCCGATTTGTGTCCAAACTCATTACGATGACTTTTTGGTTTCAATTATGAGGGGGC 180 * * * * * * consensus_7984#2 -ACCCGACCGATAA---TGATCGTTCCGTACGGGGTGA----TATAGCAATGATGCTGTT 219 consensus_7984#3 -AAT-------TTA---TTTTCATCCCGTGTTATATCT----TGTGGCCGAGTGGATGCC 188 consensus_7984#1 AATTAAACTACTCG---TAATCATGTTCCTTTTCATTG----TGAGCTTTATTTTGACCC 223 consensus_7984#0 CAACGTTGTCTCCAGTTTCCTCGTTATGTTTGTTATGTGCGCCGTCACAATAAGGAAACT 240 * * ** * * consensus_7984#2 TCAATGTGGGATTGTA-CAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATG 278 consensus_7984#3 CAGTTAATGTATGACG-TGGTAAGACCGCCAATCAGGGAGCAGTGAATTATTGATTGGAA 247 consensus_7984#1 TTGAACTATTATTGTA-CGATT-TTCCATTCTTGAGTTATACCCAGTCTATTAATTACTG 281 consensus_7984#0 TAGATGATCTCCAGCATCGGCAGTACACCTTTTTGTCTGTTATGGACTCAATATCCACAA 300 * * consensus_7984#2 TGGTATTG-ATGATAGATTGTGT------TTTTCTAGCG-ACGTGTTTGTTTCCGTAATA 330 consensus_7984#3 CAGTGACA-CACGAAAACCGTACGAG---CAGTCTAGAGTACGTATCGGTC--------- 294 consensus_7984#1 CTCTCCCT-ATTCACAGCCGCCTTTGGCTAACTCTTGTACGAATGTTATTTTCCATTTTA 340 consensus_7984#0 CGTCAACACATTTAGTAATATGTTTC-TGGATTCCATAATTGATAGGAATCTTCCGTTTC 359 ** * * consensus_7984#2 ACTGTAAGA-GTGTTTACTTTGGTGGTTGTTGTTAGTTGGTGTGTAGTGCGTGGAAAGGA 389 consensus_7984#3 ------------------------------------------------------------ consensus_7984#1 TTGGTACGATGTGGTCAGTTTGTTTGGTATATAAACTCAATATGTTTCGAATACAAGGAT 400 consensus_7984#0 CCAAGATGAAGCATTACAGTAGTGTATACAGCATAGCCGATG-GCTCCGCTGAATGAGCC 418 consensus_7984#2 CTAGGTGTTT-------------------------------------------------- 399 consensus_7984#3 ------------------------------------------------------------ consensus_7984#1 TCATACAGCAGAGGCTGTTATTGGTGTTTTGAACTTAACTGGCTGGTCT--AGGCGGAAG 458 consensus_7984#0 AAAAACAGTGAGAGCTAGTACATCCTTTAATGACAAACGGAAAATGTCTCTAAAAGACTT 478 consensus_7984#2 ------------------------------------------------------------ consensus_7984#3 ------------------------------------------------------------ consensus_7984#1 CAGGATCGATAAGCGTTCTAGACTGCTCGTACGGTTTCTGTGTGTCACTGTTCCAATGAA 518 consensus_7984#0 CGGAATCGGCACAGAACGGAGCATATCTGGGAGCATATCACATACTATAGTATGCAAGAC 538 consensus_7984#2 ------------------------------------------------------------ consensus_7984#3 ------------------------------------------------------------ consensus_7984#1 TAATTCGCTACT------------------------------------------------ 530 consensus_7984#0 ATTCATTTTGGTCCAATATACTGACTGAAATAGTGTTAGTGAGACAAACTGATGCGTATC 598 consensus_7984#2 ----------------------- consensus_7984#3 ----------------------- consensus_7984#1 ----------------------- consensus_7984#0 ACCCAAACCCGAAACGAATNGTT 621 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||