These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 712 fasta sequence [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAG--TTTCTTTCCG--TTCTA-TCTG--TTTTCTT-A-G-TTG-TCGGTAGTAC-TTTTG-TA-TACT--AAAAG-ACTATGAGTAG-AT-ATAGTG---ACCAATCATCCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL SMAA85827 [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAG TTTCTTT CG TTCTA TCTG TTTTCTT A G TTG TC GTAGTAC TTTTG TA TACT AAAAG ACTAT AGTAG AT ATAGTG ACCAATCATC ] [+] EMBL SMAA85828 [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATT TTCAG TTTTTTTCCG TTCTA TCTG TTTTCTT ATG TTG TCGGTAGTAC TTTTG TA TACT AAAAG ACTATGAGTAG ] [+] EMBL SMAA85826 [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGC ] [-] EMBL AI977024 [ TTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAGATTTTCTTTCCGATTTCTATTCTGTTTTTTCTTAA GTTTGTTCGGTAGTACTTTTTGTTATTACTTAAAAAGAACTATGAGTAGTATAATAGTGTACACAAATCATTCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] consensusID : consensus_8006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GAAGATATNTATGACCCTAAAAGCAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCAACAAAATTGGATAGTCGNAATGCATAAGTGGATGGTTATGTATGAACATAATTTAGTGAATAAAAAATGGTAANCATNATTGNTTGTCTTATGTTTAGAAAGATGGGATTGGTGGGAAGATAAGATGATGGTAACTACAGACAAGATAGGTTGGCTTNNATGATTGTTTNTGTGTGTGTGGT] [+] EMBL SM959 [GAAGATATNTATGACCCTAAAAGCAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCAACAAAATTGGATAGTCGNAATGCATAAGTGGATGGTTATGTATGAACATAATTTAGTGAATAAAAAATGGTAANCATNATTGNTTGTCTTATGTTTAGAAAGATGGGATTGGTGGGAAGATAAGATGATGGTAACTACAGACAAGATAGGTTGGCTTNNATGATTGTTTNTGTGTGTGTGGT] consensusID : consensus_8006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [TGGATACAATGGCAGCATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTAAGNANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTNTNCANCCANCNATATTGGTTAGCTGAAC] [+] EMBL SM966 [TGGATACAATGGCAGCATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTAAGNANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTNTNCANCCANCNATATTGGTTAGCTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8006#0 AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCG 60 consensus_8006#1 -----------GAAGATATNTATGACCCTAAAAGCAA-GGATTCTGTCGTGCATGTGTCG 48 consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 ACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGT 120 consensus_8006#1 ACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGT 108 consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 GTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAG 180 consensus_8006#1 GTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAG 168 consensus_8006#2 ---------------------------------------------TGGATACAATGGCAG 15 ** ************ consensus_8006#0 CATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAA 240 consensus_8006#1 CATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAA 228 consensus_8006#2 CATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTA--AG 73 ******* ************************ *** ******************* * consensus_8006#0 CATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTG 300 consensus_8006#1 CATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTG 288 consensus_8006#2 NANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTN 133 * ** **** *** ***** ****** ** * *** ***** **** ** *** * consensus_8006#0 TTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATA 360 consensus_8006#1 TTCATCCAACAAAATTGGATAGTCGNAATGCAT-AAGTGGATGGTTATGTATG-AACATA 346 consensus_8006#2 TNCANCCANCNATATTGGTTAGCTGAAC-------------------------------- 161 * ** *** * * ***** *** * * consensus_8006#0 ATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGAT 420 consensus_8006#1 ATTTAGTGAATAAAAAA--TGGTAANC-ATNATT-GNTTGT-CTTATGT-TTAGAAAGAT 400 consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 GGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTC 480 consensus_8006#1 GGG---ATTGGTGGGAAGATAA-GATGATGGTAA-CTAC--AGACAAGATAGG--TTGGC 451 consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 TTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAGTTTCTTTCC 540 consensus_8006#1 TTNNA-TGATTGTTTNTG-TGTGTGTG-GT------------------------------ 478 consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 GTTCTATCTGTTTTCTTAGTTGTCGGTAGTACTTTTGTATACTAAAAGACTATGAGTAGA 600 consensus_8006#1 ------------------------------------------------------------ consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 TATAGTGACCAATCATCCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAA 660 consensus_8006#1 ------------------------------------------------------------ consensus_8006#2 ------------------------------------------------------------ consensus_8006#0 AAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA 712 consensus_8006#1 ---------------------------------------------------- consensus_8006#2 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||