These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 998 fasta sequence [AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG-CGGTTTCTTAGCAGGAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGTAAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGTTTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTAGGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTTCAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA] [+] EMBL CD081328 [AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTCTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTCTTTGCTGTTCTCACTGCCGTCTATTTTCTATAAATGTAACCAGCCGGTTTCCTAGCccg ] [-] EMBL CD075160 [ TTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGNAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTCGACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG CGGTTTCTTAGCAG ] [-] EMBL CD119900 [ GACAGCAGTGACTATTGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAGTTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAG CGGTTTCTTAGCAGAAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGTAAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGTTTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTAGGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTTCAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA] consensusID : consensus_8009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CAGNGCCANAATTTGGCACGAGGGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC] [+] EMBL CD079633 [CAGNGCCANAATTTGGCACGAGGGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC] [+] EMBL SMAA18483 [ CCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCNACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGAAAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGTTAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGGAGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATCCGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGTTGTC ] consensusID : consensus_8009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [TCGGCACGAGGTGCAAGGTCAAGTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATANCGAATCAGCAAGAAGAACTTT] [+] EMBL CD077680 [TCGGCACGAGGTGCAAGGTCAAGTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGTCACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAGATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGTTGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAACTTGACTCAATANCGAATCAGCAAGAAGAACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8009#0 ---AGCCAAGAATAGCGGCACGAGGCTTGCCGTTCAAGCATGTGTGAATGGAGTTGATGT 57 consensus_8009#1 CAGNGCCANAATT--TGGCACGAGG---GCCGTTCAAGCATGTGTGAATGGAGTTGATGT 55 consensus_8009#2 --TCGGCACGAGGTGCAAGGTCAAG-TTGCCGTTCAAGCATGTGTGAATGGAGTTGATGT 57 * ** * * * ******************************** consensus_8009#0 CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 117 consensus_8009#1 CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 115 consensus_8009#2 CACTTGAACAGAATATGTTTCCTAACAATGATGATTGCAACAATGATTCAGTCAATCAAG 117 ************************************************************ consensus_8009#0 ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 177 consensus_8009#1 ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 175 consensus_8009#2 ATAGTGCACCTGCTGTCCACGTAGATGATGTACAACGTATGGAAGCTCGTCTTTTAAAGT 177 ************************************************************ consensus_8009#0 TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 237 consensus_8009#1 TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 235 consensus_8009#2 TGTTGGATGAATTTAACGTTGGGAAATCATCCTTTGGTCCAAATTGTCCTTATGAAAAAC 237 ************************************************************ consensus_8009#0 TTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGA 297 consensus_8009#1 TTGACTCAATACGAAATCAGCAAGAAGAACTTATGCGATTGCATTTTGAGCAAGATAGGA 295 consensus_8009#2 TTGACTCAATANCGAATCAGCAAGAAGAACTTT--------------------------- 270 *********** ****************** consensus_8009#0 AAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGT 357 consensus_8009#1 AAATGATGTCGATCCTCGAAACAGGCTCAACTCTCGCGCGGCGTCCTGTTAGAGCACTGT 355 consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 TAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGG 417 consensus_8009#1 TAACAGACGAAGGTCGAAAGACTACAAAAGCAAATATTGATGCACTAGTCACACGACTGG 415 consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 AGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATC 477 consensus_8009#1 AGTCTCTGAGTTATGCAATACATAATCTTCACTATGCTAATAGACCTCGGTCGTAACATC 475 consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 CGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGT 537 consensus_8009#1 CGCAAACTTTTATCCAACAAGAAATATTATTCCGCTGATTTGTATTTTATCTTCTAAAGT 535 consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 TGCCAGTTAATTAGTAGTGGTACCTAATGTAACTTTGAGAATTTCGACAGCAGTGACTAT 597 consensus_8009#1 TGTCAGTTAATTAGTAGTGGTAACTAATGTAACTTTGAGAATTTC--------------- 580 consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 TGATTTTTAAATTGTGAGCAGAATGAGATCACGAAATGACGATCGTACGTAAATTGTCAG 657 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 TTTTTTGCTGTTCTCACTGTCGTCTATTTTCTATAAATGTAACGAGCGGTTTCTTAGCAG 717 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 GAGGAACACAAGTCATTAGTTAATCTTTTCTTTGACCCTTGTTGATTGACAAAATCCTGT 777 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 AAGCATAAGTTTGTATTGTTGTGTAACATTCCTTATTTTTGGCGCTTAACTGTAAGCTGT 837 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 TTAGTGATTTCTATTTAGCTATGAAAACACTGCCGTTAATACCTGGTTATGCCAGCACTA 897 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 GGTTAAAAGGTATATCTCATCATCTAGCTTAAACATTGATTTGAATGTAATATAACATTT 957 consensus_8009#1 ------------------------------------------------------------ consensus_8009#2 ------------------------------------------------------------ consensus_8009#0 CAGGCATAGATAACGGTTGATATAACAGTATGGTCTGAAAA 998 consensus_8009#1 ----------------------------------------- consensus_8009#2 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||