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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1196 fasta sequence
[TGAACGAGAGGACTTGGTCAATTCCTTGCGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGAGGACGACGTTTATGACCTAGTGTCGTCTCCGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAGATGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCCTGTGAGACTGTGGGAAAGACACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGAGGGCGTTTCGAACGAGGAAGTGGTCTCGCCCATTCACGCCACTCAGAGTTGGACGATCCTGAACTTTCCCTGTTGAATACAGACAGCCTAAGAGCGCGATTGANAGAGGCCATGAACAGAATCAGCGAACTTGAGAATGCCAAGACAGAGTTGAGTGCGCGTCTGAGTGAGCTGGAAGGCGTCATGATGTGTGAGGAANAGCCTATGGATGTGATGCCTCTCAGTTCAGGTGTGCCTGACCGATCGATGAAAGTCACGGACGAAGCTGATGCACTGTCGAAGCAGAACAAAGAGCTGATGACAGAGGTAGACTTGTTACGAAGCAGGATTTCAGAGCGCGTAACAATGTTGGACGATGTGTGCATGGAGATGGATGAGGTCAGAGGATCACTTGGTTTCTTGTTGAAGCAGGTGAAAGAATTGCGTGCAGCACATGCTGAGGCGAATGCTGACCGTGCCGACATGGCGAACAGAGTGAGTGAGTACGAACGGGCCTCACGTCGCCTATGCGAAACAGTTGGTTGACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCTTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTG]
[+] EMBL CD167633 [TGAACGAGAGGACTTGGTCAATTCCTTGCGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGAGGACGACGTTTATGACCTAGTGTCGTCTCCGCAGGTCGAGGTTGCCCATCTGCGTGAGGAAGATGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCCTGTGAGACTGTGGGAAAGACACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAG ]
[+] EMBL CD135667 [ AGGTTGCCCATCTGCGTGAGGAAAGTGCAGCGACGTTGACGGCTCTGGAGCGTTCACAGCTCGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGAGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGAGGGCGTTTCGAACGAGGAAGTGGTCTCGCCCATTCACGCCACTCAGAGTTGGACGATCCTGAACTTTCCCTGTTGAATACAGACAGCCTAAGAGCGCGATTGANAGAGGCCATGAACAGAATCAGCGAACTTGAGAATGCCAAGACAGAGTTGAGTGCGCGTCTGAGTGAGCTGGAAGGCGTCATGATGTGTGAGGAANAGCCTATGGATGTGATGCCTCTCAGTTCAGGTGTGCCTGACCGATCGATGAAAGTCACGGACGAAGCTGATGCACTGTCGAAGCAGAACANAGAGCTGATGACAGGAGTAGACTTGTTACGAAGCAGGATTTCAGAGCGCGTAACAAT ]
[-] EMBL CD113419 [ GGAAGGCGTCATGATGTGTGAGGAAAAGCCTATGGATGTGATGCCTCTCAGTTCAGGTGTGCCTGACCGATCGATGAAAGTCACGGACGAAGCTGATGCACTGTCGAAGCAGAACAAAGAGCTGATGACAGAGGTAGACTTGTTACGAAGCAGGATTTCAGAGCGCGTAACAATGTTGGACGATGTGTGCATGGAGATGGATGAGGTCAGAGGATCACTTGGTTTCTTGTTGAAGCAGGTGAAAGAATTGCGTGCAGCACATGCTGAGGCGAATGCTGACCGTGCCGACATGGCGAACAGAGTGAGTGAGTACGAACGGGCCTCACGTCGCCTATGCGAAACAGTTGGTTGACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCTTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTG]
[-] EMBL CD113456 [ GTGATGCCTCTCAGTTCAGGTGTGCCTGACCGATCGATGAAAGTCACGGACGAAGCTGATGCACTGTCGAAGCAGAACAAAGAGCTGATGACAGAGGTAGACTTGTTACGAAGCAGGATTTCAGAGCGCGTAACAATGTTGGACGATGTGTGCATGGAGATGGATGAGGTCAGAGGATCACTTGGTTTCTTGTTGAAGCAGGTGAAAGAATTGCGTGCAGCACATGCTGAGGCGAATGCTGACCGTGCCGACATGGCGAACAGAGTGAGTGAGTACGAACGGGCCTCACGTCGCCTATGCGAAACAGTTGGTTGACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTG]
consensusID : consensus_8010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[CGACAACCACATCGGGTGCCTTTCCCACAGTCTCACAAGGAATTGACCAAGTCCTCTCGTTCACCACGATACGTGACTCCAGTTCCTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAATTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGATGTGGACGCCAGGTTGGTAAAAGCAGTGTGCAGAAGTGACATGAGAAGCTTGAATGCCAGATCGTATCATTGAACATGATGTAGCATTGTCATCAGGGTCACTAGTGAT]
[+] EMBL CD122521 [CGACAACCACATCGGGTGCCTTTCCCACAGTCTCACAAGGAATTGACCAAGTCCTCTCGTTCACCACGATACGTGACTCCAGTTCCTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGA ]
[+] EMBL CD087970 [ tGGCTGAGGACAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAATTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGATGTGGACGCCAGGTTGGTAAAAGCAGTGTGCAGAAGTGACATGAGAAGCTTGAATGCCAGATCGTATCATTGAACATGATGTAGCATTGTCATCAGGGTCACTAGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8010#0 TGAACGAGAGGACTTGGTCAATTCCTTGCGAGACTGTGGGAAAGGCACCCGATGTGGTTG 60
consensus_8010#1 ------------------------------------CGACAACCACATCGGGTGCCTTTC 24
* ** ** * * ** **
consensus_8010#0 TCGGTGAGTTGGCAGAGGTTGATGAGGACGACGTTTATGACCTAGTGTCGTCTCCGCAGG 120
consensus_8010#1 CCACAGTCTCACAAGGAATTGACCAAGTCCTCTCGT-TCACCACGATACGTGACTCCAGT 83
* * * ** **** * * * * * * *** * *** * ***
consensus_8010#0 TCGAGGTTGCCCATCTGCGTGAGGAAGATGCGGCGACGTTGACGGCTCTGGAGCGTTCAC 180
consensus_8010#1 TC----CTACTCCTCAGAATGC-----ATACA-CGACGAGCACAAGCCTAGTGTGTC--- 130
** * * * ** * ** ** * ***** ** ** * * **
consensus_8010#0 AGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGA 240
consensus_8010#1 -GGTTGGTTCTCCGACCAGACTTGT--GAGTGTGGAGACTCAAGCGACAGACAGCG-TGT 186
* *** * ** * ** **** * *** ** ** * * * **
consensus_8010#0 ACGAGAGGACTTGGTCGATTCCCTGTGAGACTGTGGGAAAGACACCCGATGTGGTTGTCG 300
consensus_8010#1 CTTGGTTGGCT--ACTGACACATTGTCA-ACTTCAGGATTTACCTATCCGTCGACCGTAG 243
* * ** ** * *** * *** *** ** * ** *
consensus_8010#0 GTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTC 360
consensus_8010#1 ACCAGTCGACCATGAGTG-CAGTGGAGAT-GACGAGAGAGAAGCTAGTGAGTTCAAGTTT 301
*** * * * ** ** ** *** * * ** * * ****
consensus_8010#0 CTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACC 420
consensus_8010#1 GTGTGAAGATA--AGTCGAATGTGGT-TAGTCAACT--GCGTGAAGAGTTG-GCGTCTTG 355
** **** ** ** ** * ** *** * ** * * *** **
consensus_8010#0 GAATGGACAGACAAACTATGGACTTATGTGTTGAGGGCGTTTCGAACGAGGAAGTGGTCT 480
consensus_8010#1 TTATGAACAGATAG----TGAAGC----TGTCTAAATCGGTT--GAGGAGAGTGATGCTT 405
*** ***** * ** * *** * ** ** * *** * * *
consensus_8010#0 CGCCCATTCACGCCACTCAGAGTTGGACGATCCTGAACTTTCCCTGTTGAATACAGACAG 540
consensus_8010#1 CGTTGATGGATGT---TCGGCGTTTGTTGACTGTGAA-----------------GGAGAG 445
** ** * * ** * *** * ** **** ** **
consensus_8010#0 CCTAAGAGCGCGATTGANAGAGGCCATGAACAGAATCAGCGAACTTGAGAATGCCAAGAC 600
consensus_8010#1 TGAATTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGATGTGGACGCCAGGTT 505
* *** *** *** * * * * * ** ** * * **** *
consensus_8010#0 AGAGTTGAGTGCGCGTCTGAGTGAGCTGGAAGGCGTCATGATGTGTGAGGAANAGCCTAT 660
consensus_8010#1 GGTAAAAGCAGTGTGCAGAAGTGACATGAGAAGCTTGA----ATGCCAGATCGTATCATT 561
* * * * ***** ** * ** * * ** ** * *
consensus_8010#0 GGATGTGATGCCTCTCAGTTCAGGTGTGCCTGACCGATCGATGAAAGTCACGGACGAAGC 720
consensus_8010#1 GAACATGATGTAGCATTGTCATCAGGGTCACTAGTGAT---------------------- 599
* * ***** * ** * * * ***
consensus_8010#0 TGATGCACTGTCGAAGCAGAACAAAGAGCTGATGACAGAGGTAGACTTGTTACGAAGCAG 780
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 GATTTCAGAGCGCGTAACAATGTTGGACGATGTGTGCATGGAGATGGATGAGGTCAGAGG 840
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 ATCACTTGGTTTCTTGTTGAAGCAGGTGAAAGAATTGCGTGCAGCACATGCTGAGGCGAA 900
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 TGCTGACCGTGCCGACATGGCGAACAGAGTGAGTGAGTACGAACGGGCCTCACGTCGCCT 960
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 ATGCGAAACAGTTGGTTGACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGC 1020
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 ACAAGCTTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGA 1080
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 CAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGT 1140
consensus_8010#1 ------------------------------------------------------------
consensus_8010#0 CGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTG 1196
consensus_8010#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||