These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1035 fasta sequence [AAATAATATATATGGATATAGGTATATA-TTA-TTGTCCATAGATTC-TTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTAAA---TGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGTAAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC-TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTCTCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAAGACCACCAGTTTCAG] [-] EMBL AI618804 [AAATAATATATATGGATATAGGTATATA TTA TTGTCCATAGATTC TTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTAAAACGTGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAA ] [+] EMBL CD073322 [ TATGTATATATTTATTTGTTCATAGATTCTTTAATACAAATTCGAGGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTAGTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGCTGATCCTTTGTATA TGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATTGCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGATAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGTAAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATT ] [+] EMBL CD125093 [ AATCAACAAATTCTGCATATTGACGTGGACTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCCTTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAAATAGTCATATTGTTATTCATCAT ] [-] EMBL CD078862 [ nTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAATAGTCC TTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTCTCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAAGACCACCAGTTTCAG] [+] EMBL CD147089 [ CCATAACAAATCCATTAATAGCCGCATCTAATAGTCCTTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCAT ] consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [ATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTCCTCGTGCCGATTCTGCCTCGAGGCCAATTC] [-] EMBL CD077400 [ATACACCGGTACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACGAATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTGATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTACAATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTGTCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTCCAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGACTTTCCTGAGTCCTCGTGCCGATTCTGCCTCGAGGCCAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8011#0 AAATAATATATATGGATATAGGTATATATTATTGTCCATAGATTCTTAATACAAATTCGA 60 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GGCAAATAAGAGTTGTATGGTAGGTAATAAATAATATAACATGTCAGTCAGTGATCAGTA 120 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GTATTAGAAGTAGTAGTAGTAATGTTTTACAACTTGTGGGGGGGGCGGTCAATAATTAGC 180 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 TGATCCTTTGTAAATGTATGTAGGAAAAAGTAGATTAAGTTTTATTTATATATACGAATT 240 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GCAATAACTCATCAACCGAATCGTTCAGATAATAATGAGACCAGTTTACGTTTTCCTCGA 300 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 TAAGTTTGTCTTAAACATTCAACCAAACTACGAAATTGTAATGGTCCATCTGGTCGAAGT 360 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AAATGAAAGGTGTCTCTGGCTCGTGTTAAAAAATCAACAAATTCTGCATATTGACGTGGA 420 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 CTAATATTTGCTAGTCGCATATGTGTAGCCATAACAAATCCATTAATAGCCGCATCTAAT 480 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 AGTCCTTCAATGGTGGTCGATCTAAACTAAGCATTTTACCCGTACACCCCGATACACCGG 540 consensus_8011#1 ---------------------------------------------------ATACACCGG 9 ********* consensus_8011#0 TACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACG 600 consensus_8011#1 TACCATTATTATTATTATTAACATAGTGTGGTGTTGGATTGCAAAAGTGTGTTGCACACG 69 ************************************************************ consensus_8011#0 AATTACCACGTCCAACTGATGGTATTGAATTAGTCATATTGTTATTCATCATCATCATTG 660 consensus_8011#1 AATTACCACGTCCAACTGATGGTAATGAATTAGTCATATTGTTATTCATCATCATCATTG 129 ************************ *********************************** consensus_8011#0 ATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTAC 720 consensus_8011#1 ATGATGACGATGATGATGAATCTATTCCATTGATATTGTTATTATTCATATTTATATTAC 189 ************************************************************ consensus_8011#0 AATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTG 780 consensus_8011#1 AATTTGTCGAATTTATATGAACTCCACATGGTATAGATCGACAACGATGTAGAATATCTG 249 ************************************************************ consensus_8011#0 TCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTC 840 consensus_8011#1 TCAATAAGGTAGGACAATGTATATTACGTATAACATGATTTAATATTTCTTGTAATGCTC 309 ************************************************************ consensus_8011#0 CAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGAC 900 consensus_8011#1 CAGGACCAAGTCGATGTCCCAAAAGACATGCCCATAATACATCATTACCAACTGGATGAC 369 ************************************************************ consensus_8011#0 TTTCCTGAGTTGTTGACAGGACAAATAATCGTGTAGCATGTAATGCAAAAGGAAATGCTC 960 consensus_8011#1 TTTCCTGAGTCCT---CGTGCCGATT--CTGCCTCGAGGCCAATTC-------------- 410 ********** * * * * * * * * * *** * consensus_8011#0 TCCATGTCCAACCACAATTATCCATATAACGTGCTAATGAAAATAATTGAATTGGTCCAA 1020 consensus_8011#1 ------------------------------------------------------------ consensus_8011#0 GACCACCAGTTTCAG 1035 consensus_8011#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||