cluster # 8027

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Schistosoma mansoni
cluster # 8027 cluster # 8027 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8027#0 length = 1381 sequences # 5

consensus_8027#1 length = 519 sequences # 1

consensusID : consensus_8027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1381
fasta sequence

                              [GAAAGAATCTGACTTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAAGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCCAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGCATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAATATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGGTCACTTACTGGTATTGTTGGCTGTATCATTGGTCAATGTAAGTTGGACAATAAACAACTATCTACACAGAACCAGGCGTCCCCGAAATCCTTGTCATTTAGTACTTCTGAGTGGAAATATGATTGTGAACTAAACTTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCGTCCCAATGCATGTGAAAGTTATCCCAAATAATCGTCTCAAAGGACCTGTNCATTTGTGTGCTTATCTACCGTATAATCTTTCACCTAGTATTCGTGGCACGTTATTTAAGTTCGCGTACAAGGTGGTTGTGGCAGTTCAAGTAAAATATCTGAACTCAGATATCAAGATGCATACTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAAGACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTTCCTTGCAGTCACACAAAATCAATAGCTTTTCGTTTGAAGATACGGAAACACATACTACTAAGTCAGTCGGCCAAATATATTCCGCTTTGTCTCATAATGTTTCCCGGTGTGAAAACTCGAACTGCTCAGGTCATTCTCCAGAAAAATCAAACAAAGTTTACATCTATCCCAGTTCACATATAGAATTAATGAATCTGTTAGCATGTTCACCACCCGGTGGGTGTATTTCCTGTGAACAATATCAATCGTGATTTTTTATCATAATCTTTACGGCTGGTCAAATTTTTCTATAGGATTTCCTTCCAGAAGTTTCATACTAAATGATAAATATTTGAATACAAAGTTTGTGTCACTGTTGTTCACTTAATATTTTTATACTCCATCATGTACTTAATCAGTTCTACATCGTCAGTTAAGCGCGAATTTT]

[+] EMBL CD094926             [GAAAGAATCTGACTTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAAGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCCAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGCATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAATATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGGTCACTTACTGGTATTGTTGGCTGTATCATTGGTCAATGTAAGTTGGACAATAAACAACTATCTACACAGAACCAGGCGTCCCCGAAATCCTTGTCATTTAGTACTTCTGAGTGGAAATATGATTGTGAACTAAACTTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCGTCCCAATGCATGTGAAAGTTATCCCAAATAATCGTCTCAAAGGACCTGTNCATTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD095172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGATTGTGAACTAAACTTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCATCCCAATGCATGTGAAAGTTATCCCAAATAATCGTCTCAAAGGACCTGTCAATTTGTGTGCTTATCTACCGTATAATCTTTCACCTAGTATTCGTGGCACGTTATTTAAGTTCGCGTACAAGGTGGTTGTGGCAGTTCAAGTAAAATATCTGAACTCAGATATCAAGATGCATACTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAAGACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTTCCTTGCAGTCACACAAAATCAGTAGCTTTTCGTTTGAAGATACGGAAACACATACTACTAAGTCAGTCGGCCAAATATATTCCGCTTTGTCTCATAATGTTTCCCGGTGTGAAAA                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD084033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTCGCGTACAAGGTGGTTGTGGCAGTTCAAGTAAAATATCTGAACTCAGATATCAAGATGCATACTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAAGACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTATCCTTGCAGACACACAAAATCAATAGCTTTACGTTTGAAGATACGGAAACACATACTACTAAGTCAGTCGGCCAAATATATTCCGCTTTGT                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD201564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCAAGATGCATACTATTCAATTGCCTCTTCGTATTTACCCGTCTGCAATAATGTATCACAGTTTAAGACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTTCCTTGCAGTCACACAAAATCAATAGCTTTTCGTTTGAAGATACGGAAACACATACTACTAAGTCAGTCGGCCAAATATATTCCGCTTTGTCTCATAATGTTTCCCGGTGTGAAAACTCGAACTGCTCAGGTCATTCTCCAGAAAAATCAAACAAAGTTTACATCTATCCCAGTTCACATATAGAATTAATGAATCTGTTAGCATGTTCACCACCCGGTGGGTGTATTTCCTGTGAACAATATCAATCGTGATTTTTTATCATAATCTTTACGGCTGGTCAAATTTTTCTATAGGATTTCCTTCCAGAAGTTTCATACTAAATGATAAATATTTGAATACAAAGTTTGTGTCACTGTTGTTCACTTAATATTTTTATACTCCATCATGTACTTAATCAGTTCTACATCGTCAGTTAAGCGCGAATTTT]
[+] EMBL CD167161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATACTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAAGACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTTCCTTGCAGTCACACAAAATCAATAGCTTTTCGTTTGAAGATACGGA                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_8027#0
GAAAGAATCTGACTTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAAGCTAT
GTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCCAAAGA
TCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGCATTAA
AAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAATATTTT
GTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAATCTCG
GTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAATTGTG
AAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGGTCACTTACTG
GTATTGTTGGCTGTATCATTGGTCAATGTAAGTTGGACAATAAACAACTATCTACACAGA
ACCAGGCGTCCCCGAAATCCTTGTCATTTAGTACTTCTGAGTGGAAATATGATTGTGAAC
TAAACTTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATAT
GTATCGTCCCAATGCATGTGAAAGTTATCCCAAATAATCGTCTCAAAGGACCTGTNCATT
TGTGTGCTTATCTACCGTATAATCTTTCACCTAGTATTCGTGGCACGTTATTTAAGTTCG
CGTACAAGGTGGTTGTGGCAGTTCAAGTAAAATATCTGAACTCAGATATCAAGATGCATA
CTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAAGACTTC
AAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTTGGGTTC
CTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTTCCTTGC
AGTCACACAAAATCAATAGCTTTTCGTTTGAAGATACGGAAACACATACTACTAAGTCAG
TCGGCCAAATATATTCCGCTTTGTCTCATAATGTTTCCCGGTGTGAAAACTCGAACTGCT
CAGGTCATTCTCCAGAAAAATCAAACAAAGTTTACATCTATCCCAGTTCACATATAGAAT
TAATGAATCTGTTAGCATGTTCACCACCCGGTGGGTGTATTTCCTGTGAACAATATCAAT
CGTGATTTTTTATCATAATCTTTACGGCTGGTCAAATTTTTCTATAGGATTTCCTTCCAG
AAGTTTCATACTAAATGATAAATATTTGAATACAAAGTTTGTGTCACTGTTGTTCACTTA
ATATTTTTATACTCCATCATGTACTTAATCAGTTCTACATCGTCAGTTAAGCGCGAATTT
T

consensusID : consensus_8027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GACTTTGAAAGAATCTGACTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAAGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCCAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGCATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAATATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCATCCCAATGCATGTGAAAGTTATCCCAATAATCGTCTCAAGGACCT]

[+] EMBL CD095086             [GACTTTGAAAGAATCTGACTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAAGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCCAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGCATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAATATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCATCCCAATGCATGTGAAAGTTATCCCAATAATCGTCTCAAGGACCT]




>consensus_8027#1
GACTTTGAAAGAATCTGACTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAAA
GCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATCC
AAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAGC
ATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAAT
ATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAAA
TCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCAA
TTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGTCGATG
CTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATCATCCCAA
TGCATGTGAAAGTTATCCCAATAATCGTCTCAAGGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8027#0      ------GAAAGAATCTGACTTTTTTTTTTGCGTTGCCACAAGTCAGTAGGAGTTCCTGAA 54
consensus_8027#1      GACTTTGAAAGAATCTGACTTTTTTTTT-GCGTTGCCACAAGTCAGTAGGAGTTCCTGAA 59
                            ********************** *******************************

consensus_8027#0      AGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATC 114
consensus_8027#1      AGCTATGTATTAAGGTGCTTACTTGTGTGATGAAATAACAGTAGCAACGCTTGGTTTATC 119
                      ************************************************************

consensus_8027#0      CAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAG 174
consensus_8027#1      CAAAGATCTCCATCTCCTGGTGCTTTTGCAAAGTCATAATTAAAAATTAGTATATCAGAG 179
                      ************************************************************

consensus_8027#0      CATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAA 234
consensus_8027#1      CATTAAAAAAGGAAATGGTAACGTAATTCACTATTACTGTTATTTTCATCTGGATGCCAA 239
                      ************************************************************

consensus_8027#0      TATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAA 294
consensus_8027#1      TATTTTGTCATTTTAAGGGTTTCGTACGCTAATAAATGTCATCAACATCTCACGAACAAA 299
                      ************************************************************

consensus_8027#0      ATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCA 354
consensus_8027#1      ATCTCGGTTTAGCTGCCAAGCTGGTCGGGTCTAGCGTATATTCGGGTGGAGATTTCGTCA 359
                      ************************************************************

consensus_8027#0      ATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGGTCAC 414
consensus_8027#1      ATTGTGAAATAACTTTTCCTGGCAATTGGGATGCAGTTAGAGAGGAATATAAATGTCGAT 419
                      *******************************************************   * 

consensus_8027#0      TTACTGGTATTGTTGGCTGTATCATTGGTCAATGTAAGTTGGACAATAAACAACTATCTA 474
consensus_8027#1      GCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGTTAATATGTATC-ATCCC 478
                              ******   *    ******       ****  *  ****   * * ***  

consensus_8027#0      CACAGAACCAGGCGTCCCCGAAATCCTTGTCATTTAGTACTTCTGAGTGGAAATATGATT 534
consensus_8027#1      AATGCATGTGAAAGTTATCCCAATAATCGTC-TCAAGGACCT------------------ 519
                       *   *       **   *  ***  * *** *  ** ** *                  

consensus_8027#0      GTGAACTAAACTTCGATGCTGGATCATTGTTCATTTCTACATTGGAGTCGAAAAGTCAGT 594
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      TAATATGTATCGTCCCAATGCATGTGAAAGTTATCCCAAATAATCGTCTCAAAGGACCTG 654
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      TNCATTTGTGTGCTTATCTACCGTATAATCTTTCACCTAGTATTCGTGGCACGTTATTTA 714
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      AGTTCGCGTACAAGGTGGTTGTGGCAGTTCAAGTAAAATATCTGAACTCAGATATCAAGA 774
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      TGCATACTATTCAATTGCCTCTTCGTATTTTACCGTCTGCAATAATGTATCACAGTTTAA 834
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      GACTTCAAGAATGTGACGACAAGAAAGAAACATATTCGCCCGACGTGTCAAATCCGTTTT 894
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      GGGTTCCTGATACCAGAGATAAAGACTCTTGCTTTAATTTTGGCTTTGATGGAGGCTTTT 954
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      CCTTGCAGTCACACAAAATCAATAGCTTTTCGTTTGAAGATACGGAAACACATACTACTA 1014
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      AGTCAGTCGGCCAAATATATTCCGCTTTGTCTCATAATGTTTCCCGGTGTGAAAACTCGA 1074
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      ACTGCTCAGGTCATTCTCCAGAAAAATCAAACAAAGTTTACATCTATCCCAGTTCACATA 1134
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      TAGAATTAATGAATCTGTTAGCATGTTCACCACCCGGTGGGTGTATTTCCTGTGAACAAT 1194
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      ATCAATCGTGATTTTTTATCATAATCTTTACGGCTGGTCAAATTTTTCTATAGGATTTCC 1254
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      TTCCAGAAGTTTCATACTAAATGATAAATATTTGAATACAAAGTTTGTGTCACTGTTGTT 1314
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      CACTTAATATTTTTATACTCCATCATGTACTTAATCAGTTCTACATCGTCAGTTAAGCGC 1374
consensus_8027#1      ------------------------------------------------------------
                                                                                  

consensus_8027#0      GAATTTT 1381
consensus_8027#1      -------