These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 513 fasta sequence [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATAATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGTAACGTTCTCTACC] [+] EMBL CD159227 [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGCTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATG ] [+] EMBL CD159193 [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATG ] [+] EMBL CD083592 [ TGGAAGTTGATGATACAGGTCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATAATAAAAT ] [+] EMBL CD187974 [ GATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACGGGTTTGCCCTCTAGACAACCGTGAACGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTATTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATNATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGTAACGTTCTCTACC] [+] EMBL CD147388 [ CTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAAC ] consensusID : consensus_8043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTGGGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA] [+] EMBL CD131284 [TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTGGGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8043#0 TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAG 60 consensus_8043#1 ------------------------------------------------------------ consensus_8043#0 GTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCA 120 consensus_8043#1 ------------------------------------------------------------ consensus_8043#0 GTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGG 180 consensus_8043#1 -TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGG 59 *********************************************************** consensus_8043#0 ATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGT------- 233 consensus_8043#1 ATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTG 119 ***************************************************** consensus_8043#0 ---------------------------------ATTGAATGTCAAGCTAACCACGCCTCT 260 consensus_8043#1 GGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCT 179 *************************** consensus_8043#0 GCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCAC 320 consensus_8043#1 GCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCAC 239 ************************************************************ consensus_8043#0 TGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAA 380 consensus_8043#1 TGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA------ 293 ****************************************************** consensus_8043#0 CTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGT 440 consensus_8043#1 ------------------------------------------------------------ consensus_8043#0 TGTACCTGTTCAGATAATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGT 500 consensus_8043#1 ------------------------------------------------------------ consensus_8043#0 AACGTTCTCTACC 513 consensus_8043#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||