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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 949 fasta sequence
[CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC]
[+] EMBL CD127946 [CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACG ]
[+] EMBL CD115587 [ CAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATG ]
[-] EMBL CD128868 [ CATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC]
consensusID : consensus_8060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence
[TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA-CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT]
[+] EMBL CD183976 [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT]
[+] EMBL CD184052 [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCTTTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAAAGTCTGCTAGAAATTTATTAAAATTATTAGGGGAGGGCATTCCTCTTTTTTCTGATCAAGTTAACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAG ATACCCGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATNTGGAAGTACAATCAGCAng ]
consensusID : consensus_8060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC]
[+] EMBL CD071289 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8060#0 CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACT 60
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 TCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATG 120
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 AAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTT 180
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 GGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACAT 240
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 GACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTAT 300
consensus_8060#1 ----------------------------------------------TTCAAGCTCTTCAT 14
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 TAACCTACCTATGAACATACTACTTACTTG-ATTACCTATGAA-ACATGTACATATAGAA 358
consensus_8060#1 GTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAA 74
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 GTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAA-ACTAACTAACTGCA--- 414
consensus_8060#1 GTCAGAGGAAAC-ACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATC 133
consensus_8060#2 --------------------------------------------CCCGCCGTTTACC--- 13
* *
consensus_8060#0 --TAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCAT 472
consensus_8060#1 CTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTA---ATTCAC 190
consensus_8060#2 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCG 73
** * ** ** * **
consensus_8060#0 GTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCT 532
consensus_8060#1 CAAAAGCTCAACAATTAGCTCTTCAAAGTATACGGATTTTACAGGCAAAGCGTAATACTG 250
consensus_8060#2 TCAAAACCAATCAGTGGACATCGCAA--TGCTTTGTTTTAATTAGACAGTCGGATTCCCC 131
* * * * * * *** * * * *
consensus_8060#0 TGTTCTATGACTGAATTAATT---TTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACT 589
consensus_8060#1 CCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACAT--TTGGAAGT 308
consensus_8060#2 TGGTTCGTGCCAGTTCTGAGT---TAGCCGTCGCGCGCCAGAC----CAT----GGAAGT 180
* * * * * * ** * **** *
consensus_8060#0 GAAGACA-TGATTGTTG-TTTATAGTCAATGGAATAATAATAATGAAGACAGT-GATGGT 646
consensus_8060#1 ACAATCAGCAGTTATTG-AAT-TAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGAT 366
consensus_8060#2 ACAGCCG--GCTTGACGCAACGTGGAACATGTCCTCGCG-CGTTGCTAGCTGC-----GC 232
* * ** * * * ** * * *
consensus_8060#0 AACATTAACATAAATAA--AACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACT 704
consensus_8060#1 A-TATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATT 425
consensus_8060#2 GACACTTACAGCTGAAACCGCCC------ACGATCGACCCGGGTCAGAGTCCAGTAAC-- 284
* * * ** * * * * * * **
consensus_8060#0 AACTAACTAATTAACTGTACGTGTTA-TGAGGATGAGTTTGTTTTTTCTGCTTATTTGAC 763
consensus_8060#1 GTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCT-CATATGGACA 484
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 TTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGA 823
consensus_8060#1 GTAATGAGGAAAGATATCCTTCTCATC--CTGCCCCGTTAGGT----------------- 525
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 GAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCA 883
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 AGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGA 943
consensus_8060#1 ------------------------------------------------------------
consensus_8060#2 ------------------------------------------------------------
consensus_8060#0 TTGGGC 949
consensus_8060#1 ------
consensus_8060#2 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||