These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 812 fasta sequence [TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCGTGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAGATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATCAAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCATTGT] [-] EMBL CD159903 [TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCGTGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAGATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATCAAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCG ] [+] EMBL CD112757 [ CAATATAATACCCCCAACACCTCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGTTTTAATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTT AAGGTTGATGAAAGCTCATTAACTGGTGAAC ] [-] EMBL CD171134 [ GAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTACATTGT] [-] EMBL CD185621 [ GTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATCACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCAT ] [-] EMBL CD185641 [ GTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATCACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAAAGGTTGATGAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATGTTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGAGTGAATTCACAGGCCGGTATTATATTTGCAT ] consensusID : consensus_8073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [TCATTTATAATGACATTATCTAGTTTATTTTCTTCTATTTAATGATTTTCCTTTTTTCACAAAGATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTAAGTGATTTTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTCCTACTTTTATTTT] [+] EMBL CD118242 [TCATTTATAATGACATTATCTAGTTTATTTTCTTCTATTTAATGATTTTCCTTTTTTCACAAAGATTTTGGTGGAGAGCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACTTTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACAATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGGTGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATATGGTAAGTGATTTTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTCCTACTTTTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8073#0 TGGACGACTGTCCGCCGAAGACAGCAATACTCCGTCCGCGAATTTCGGTTGTTCTATGCG 60 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 TGAACTGCAGGGACTCATGCAGTTGCGTGGAGCTGAAGCAGTAGAAGTTGTGAATAAAAG 120 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 ATTTGATGGAGCTAGTGGTTTGTGTCAGCGTCTTAAAACTTCCCCAACTCAAGGATTATC 180 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 AAGTCATGATTTGGTAAGACGTCGTGAAGTCTTCGGGACCAATATAATACCCCCAACACC 240 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 TCCAAAAAGCTTTTTTCAACTTATGTGGGAAGCTTTACAGGATGTAACTTTGATTGATTT 300 consensus_8073#1 ----------------------------------TCATTTATAATGACATTATCTAGTTT 26 * * * ** ** * *** consensus_8073#0 AATGGTGGCTGCAGCTGTATCACTTTTACTGGCATTATATTCTAAATATTTTGGTGGAGA 360 consensus_8073#1 ATTT---TCTTCTATTTAATGATTTT------CCTTTTTTCACAAAGATTTTGGTGGAGA 77 * * ** * * ** * *** * ** * * *** ************* consensus_8073#0 GCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACT 420 consensus_8073#1 GCATAGTTCCGGTGATGAGACTGAAGGTGAAGTTAGTTGGATCGAAGGTGTTGCTATACT 137 ************************************************************ consensus_8073#0 TTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACA 480 consensus_8073#1 TTGTGCTGTTGTGGTTGTAGTTTTAGTGACAGCAACAAATGATTGGCAGAAAGAAAGACA 197 ************************************************************ consensus_8073#0 ATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGG 540 consensus_8073#1 ATTTCGTGGTTTACAAGATAAAATTGAATCAGATCATAAAATGTCTGTTTTACGAGATGG 257 ************************************************************ consensus_8073#0 TGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATA 600 consensus_8073#1 TGATATTACGGAAGTACTAGTTGGTGATATTGTTGTTGGTGATATATGTTTAGTGAAATA 317 ************************************************************ consensus_8073#0 TGGTGATTTACTACCTGCTGATGGAGTAGTTCTTCAAAGTAATGATTTAA--AGGTTGAT 658 consensus_8073#1 TGGTAAGTGATT--TTTTCTATAATTTTGCTTGTCCAAAAAATAACTCTATTAAATCTTC 375 **** * * * * * ** * * * ** ** *** * * * * * consensus_8073#0 GAAAGCTCATTAACTGGTGAACCGGATCAAGTGAAAAAAGGTGAAAACATTGATCCAATG 718 consensus_8073#1 CTACTTTTATTTT----------------------------------------------- 388 * * *** consensus_8073#0 TTATTATCAGGTACACATGTTATGGAAGGTTCTGGTAAAATGGTTGTTACGGCTGTTGGA 778 consensus_8073#1 ------------------------------------------------------------ consensus_8073#0 GTGAATTCACAGGCCGGTATTATATTTGCATTGT 812 consensus_8073#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||