These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCG] [+] EMBL CD142615 [CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCAC ] [-] EMBL CD145912 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCG] consensusID : consensus_8079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCGCTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACATTTGAAACAGTCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCTTCTTTCTGGTCTGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA] [+] EMBL CD142596 [TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCGCTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACATTTGAAACAGTCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCAC ] [-] EMBL CD135008 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCTTCTTTCTGGTCTGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA] consensusID : consensus_8079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [GCGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAGACTTTTTTGCGCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCCTTAGTAGGGTGTGGGTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTGCGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGACACTTTTTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATTTTTACTAAACCGCTTGAAAGCTGCAGGTGTTAGATTCGTGCAAACATCGTGGTACCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCTGGGCGGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA] [+] EMBL CD080890 [GCGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAGACTTTTTTGCGCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCCTTAGTAGGGTGTGGGTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTGCGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGACACTTTTTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATTTTTACTAAACCGCTTGAAAGCTGCAGGTGTTAGATTCGTGCAAACATCGTGGTACCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCTGGGCGGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA] consensusID : consensus_8079#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AAATTTACATGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAATATGCAACATTTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCTTTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTGAACGAACAAGAGGATATCTGAATTCAATAGCTTGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGAGTTCAAGTCTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCCTAAAATAAAACAAAATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCTAGAATTTAAATTCATTTAGTATTGCTTGCTTGAATCTTCCCATTGATGTTTTAGGACTGCAACTGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA] [+] EMBL CD091268 [AAATTTACATGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAATATGCAACATTTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCTTTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTGAACGAACAAGAGGATATCTGAATTCAATAGCTTGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGAGTTCAAGTCTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCCTAAAATAAAACAAAATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCTAGAATTTAAATTCATTTAGTATTGCTTGCTTGAATCTTCCCATTGATGTTTTAGGACTGCAACTGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8079#0 ------------------------------------------------------------ consensus_8079#1 TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCG 60 consensus_8079#3 ---------------------------------------------------AAATTTACA 9 consensus_8079#2 -----------------------------------------------------------G 1 consensus_8079#0 ------------------CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACA- 41 consensus_8079#1 CTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACA- 119 consensus_8079#3 TGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAA 69 consensus_8079#2 CGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAG 61 * * * * * consensus_8079#0 TCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTC 101 consensus_8079#1 TTTGAAACAG---TCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTC 176 consensus_8079#3 TATGCAACAT---TTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCT 126 consensus_8079#2 ACTTTTTTGC---GCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCC 118 * ** * consensus_8079#0 ACCAC-AACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTAT 160 consensus_8079#1 ACCAC-AACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTAT 235 consensus_8079#3 TTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTG--AACGAACAAGAGGA 184 consensus_8079#2 TTAGTAGGGTGTGG-GTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTG 177 ** * ** * consensus_8079#0 CACCTCGCTGTCCGTCATT-TGTACAATCTCGTGCAAA-GTGTCCCGTCCCAC---CACA 215 consensus_8079#1 CACCTCGCTGTCCGTCATT-TGTACAATCTCGTGCAAA-GTGTCCCGTCCCAC---CACA 290 consensus_8079#3 TATCTGAAT-TCAATAGCT-TGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGA 242 consensus_8079#2 CGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGAC--ACTTT 235 * * ** ** * * * * * * consensus_8079#0 GTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCC 275 consensus_8079#1 GTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCC 350 consensus_8079#3 GTTCAAGT-CTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCC 301 consensus_8079#2 TTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATT 295 ** ** * * * * * * consensus_8079#0 TCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCA 335 consensus_8079#1 TCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCA 410 consensus_8079#3 TAAAATAAAACAA-AATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCT 360 consensus_8079#2 TTTACTAAACCGC--TTGAAAGCTGCAGGTGTTAG----ATTCGTGCAAACATCGTGGTA 349 * * * * * ** * * * consensus_8079#0 ATCGCGAGCATAATGACCGGGACGTCC-ACATTTGAAACAGTCGTCCGACATCTTAAGAA 394 consensus_8079#1 ATCGCGAGCATAATGACCGGGACGTCC-ACATTTGAAACAGTCGTCT--TCTTTCTGGTC 467 consensus_8079#3 A--GAATTTAAATTCATTTAGTATTGC-TTGCTTGAATCTTCCCATTGATGTTTTAGGAC 417 consensus_8079#2 CCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCT-GGGC 408 * * * * * * * * consensus_8079#0 TACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTA 454 consensus_8079#1 TGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA---------- 517 consensus_8079#3 TGCAAC--TGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA------------- 462 consensus_8079#2 GGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA- 467 * * consensus_8079#0 TATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGT 514 consensus_8079#1 ------------------------------------------------------------ consensus_8079#3 ------------------------------------------------------------ consensus_8079#2 ------------------------------------------------------------ consensus_8079#0 CTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTG 574 consensus_8079#1 ------------------------------------------------------------ consensus_8079#3 ------------------------------------------------------------ consensus_8079#2 ------------------------------------------------------------ consensus_8079#0 GGCAGTTTCG 584 consensus_8079#1 ---------- consensus_8079#3 ---------- consensus_8079#2 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||