These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAACTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAGTTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCGTTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGGCTAGCACTAATG] [+] EMBL CD159297 [TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAACTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAGTTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCGTTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGGCTAGCACTAATG] consensusID : consensus_8089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAA] [+] EMBL CD186864 [GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAA] consensusID : consensus_8089#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 307 fasta sequence [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC] [+] EMBL CD121221 [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTACGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC] [+] EMBL CD121182 [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC] [+] EMBL CD121235 [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC] [+] EMBL CD121179 [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8089#1 -GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGT 59 consensus_8089#2 CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGT 60 consensus_8089#0 ------------------------------------------------------------ consensus_8089#1 TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 119 consensus_8089#2 TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 120 consensus_8089#0 TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 60 ************************************************************ consensus_8089#1 TTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCA 179 consensus_8089#2 TTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCA 180 consensus_8089#0 TTAATGAAGACTGCAGTTACAACAATAA-------------------------------- 88 **************************** consensus_8089#1 AGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 239 consensus_8089#2 AGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 240 consensus_8089#0 --CTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 146 ********************************************************** consensus_8089#1 AAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTA 299 consensus_8089#2 AAGGAATTATTCAACCAA--------------ACGTTTGCCGTTGACTCAAATCAAAGTA 286 consensus_8089#0 AAGGAGTTATTCAACCAA--------------ACGTTTGCCGTTGACTCAAATCAAAGTA 192 ***** ************ **** *********************** consensus_8089#1 TGGGTGAATTATATGTCTCACAAA------------------------------------ 323 consensus_8089#2 TGGGTGAATTATATGTCTCAC--------------------------------------- 307 consensus_8089#0 TGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCG 252 ********************* consensus_8089#1 ------------------------------------------------------------ consensus_8089#2 ------------------------------------------------------------ consensus_8089#0 TTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGG 312 consensus_8089#1 ------------ consensus_8089#2 ------------ consensus_8089#0 CTAGCACTAATG 324 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||