These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 730 fasta sequence [AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAANATCTCCAGA] [+] EMBL CD156264 [AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAA ] [-] EMBL CD156105 [ AACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAGCAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCATTCAAGCAGTCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAGGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAA ] [-] EMBL CD156255 [ AACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACACGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAA ] [+] EMBL CD078961 [ TGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTGCTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAANATCTCCAG ] [-] EMBL CD073415 [ TTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTGCTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTTCTGGAAGTGAAAAAACTAGAACGTGAAGAAAATCTCCAGA] consensusID : consensus_8101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAAAATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCATATNTTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTNCTGGAAGTGAAAAAACTAGAA] [+] EMBL AI111000 [CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAAAATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCATATNTTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTNCTGGAAGTGAAAAAACTAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8101#0 AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGT 60 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 GTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAAC 120 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 AATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCA 180 consensus_8101#1 --------CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCA 52 **************************************************** consensus_8101#0 TTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAA 240 consensus_8101#1 TTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAA 112 ************************ ******************************** ** consensus_8101#0 AATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGAT 300 consensus_8101#1 AATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGAT 172 ****** ***************************************************** consensus_8101#0 TTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTT 360 consensus_8101#1 TTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCAT-ATNTTTCGTCAG---TTTT 228 ************ *************************** * * * ** ** consensus_8101#0 TCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGT 420 consensus_8101#1 TTCAGCAA-------------CTAATTCAAAAACAAAA---AGAATATTTNCTGGAA--- 269 * ***** *** ** * *** **** * ** consensus_8101#0 ATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAA 480 consensus_8101#1 ---GTGAAAAAACTAGAA------------------------------------------ 284 * * *** ** * consensus_8101#0 AACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGA 540 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 GAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTT 600 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 CGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAG 660 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 CAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAA 720 consensus_8101#1 ------------------------------------------------------------ consensus_8101#0 NATCTCCAGA 730 consensus_8101#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||