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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1012 fasta sequence
[GAGGGCAACACTAAGCGATCAAACTTCATGTTTGAATTTAAGTTCTATGCGAACAGTGATGACAAAGAATTGAAGCGACATGACACTGTGACGTACTCTAGCTTAGTTCAATCACTCACTTTAAGTGATGGTTACAGAGATGTTTTAAGTTTGGGCACAGATTTTCATGCAATCTCAAATGGTTCAAAACTGTGGTACATCGATGAATCTGTTCTCGATGATTATCTACGCAAACTGCCTAAAAGTAAACTCAATGTATTCGATGCTGTTCACGCACATGAGGATGTCAAACCTGGCTTAATTGAAGGTGGTTTTACTCTGTGGGATGGCAGCAAGGATCTCGTCAATTACATATCAAAATATTTTTCGGGAAAGATGTGTGGAAAAAACGTCTTGGAATTAGGTTGTGGTTGTGGACTACCAGGTATATTCGCTGTCAAGGCTGGTGCCCGCTTAGTCAGGTTCCAGGATTACAATTCCGAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGATGCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTTTCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACAATTTACCGCACAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAATCTGGCATCGTTTTGTTAGCTTGTAAAGCTTCTTACGCACCTGGAGGTTTATAACTACATATTTATAACTTGATATGATTAATATCTGCAATTGCAAAACATCGCGGAAATCGTGAATTATTAAACTGAACTGGATTGAAGACATGACTCGAATCCCGATTTCGGCAGTTTTAATAAGATACAGATATATTTCAGTAAATCCGGAACGACTGGCTGCGAGCATCCCATCAAATGACATTAGAAATATAGTTTTTTTTTTAGAATAGTACATTTATTTGTTGTAAATAAATTG]
[+] EMBL CD084347 [GAGGGCAACACTAAGCGATCAAACTTCATGTTTGAATTTAAGTTCTATGCGAACAGTGATGACAAAGAATTGAAGCGACATGACACTGTGACGTACTCTAGCTTAGTTCAATCACTCACTTTAAGTGATGGTTACAGAGATGTTTTAAGTTTGGGCACAGATTTTCATGCAATCTCAAATGGTTCAAAACTGTGGTACATCGATGAATCTGTTCTCGATGATTATCTACGCAAACTGCCTAAAAGTAAACTCAATGTATTCGATGCTGTTCACGCACATGAGGATGTCAAACCTGGCTTAATTGAAGGTGGTTTTACTCTGTGGGATGGCAGCAAGGATCTCGTCAATTACATATCAAAATATTTTTCGGGAAAGATGTGTGGAAAAAACGTCTTGGAATTAGGTTGTGGTTGTGGACTACCAGGTATATTCGCTGTCAAGGCTGGTGCCCGCTTAGTCAGGTTCCAGGATTACAATTCCGAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAAT ]
[+] EMBL CD078968 [ GCGACATGACACTGTGACGTACTCTAGCTTAGTTCAATCACTCACTTTAAGTGATGGTTACAGAGATGTTTTAAGTTTGGGCACAGATTTTCATGCAATCTCAAATGGTTCAAAACTGTGGTACATCGATGAATCTGTTCTCGATGATTATCTACGCAAACTGCCTAAAAGTAAACTCAATGTATTCGATGCTGTTCACGCACATGAGGATGTCAAACCTGGCTTAATTGAAGGTGGTTTTACTCTGTGGGATGGCAGCAAGGATCTCGTCAATTACATATCAAAATATTTTTCGGGAAAGATGTGTGGAAAAAACGTCTTGGAATTAGGTTGTGGTTGTGGACTACCAGGTATATTCGCTGTCAAGGCTGGTGCCCGCTTAGTCAGGTTCCAGGATTACAATTCCGAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGATGCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTTTCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACAATTTACCGCACAGACC ]
[-] EMBL CD073421 [ GAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTTTCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACAATTTACCGCACAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAATCTGGCATCGTTTTGTTAGCTTGTAAAGCTTCTTACGCACCTGGAGGTTTATAACTACATATTTATAACTTGATATGATTAATATCTGCAATTGCAAAACATCGCGGAAATCGTGAATTATTAAACTGAACTGGATTGAAGACATGACTCGAATCCCGATTTCGGCAGTTTTAATAAGATACAGATATATTTCAGTAAATCCGGAACGACTGGCTGCGAGCATCCCATCAAATGACATTAGAAATATAGTTTTTTTTTTAGAATAGTACATTTATTTGTTGTAAATAAATTG]
consensusID : consensus_8104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 551 fasta sequence
[CAATTCCGAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGATGCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTTTCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACAATTTACCGCA-CAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAATCTGGCATCGTTTTGTTAGCTT-GTAAAGCTTCTTACGCACCTGGAGGTAACATCTTTGACTGGTTAACTTATGTCGAGAATCTAGGCGTGTTTCAGACAACCGTCTTTAAATTAACAACTTCTGGGGTAATACGATACATAGTGAAAATGATCAGAGCCTAATTTGTTCCGATCATCTTGTTTTGTATATTCTTTGTGTTCCGGCTTGATAAATAAGATAGTAGTTGATTGTAATTTCTAGCTTCACAAATCGTTTGGGAAGCCTAGTGTCCCGAAATCTAGAATGGCAGTCAGTCAGCTACTG]
[+] EMBL CD160111 [CAATTCCGAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGATGCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTTTCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACAATTTACCGCA CAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCGATCTGGCATCGTTTTGTTAGCTT GTAAAGCTTCTTACGCACCTGGAGGTAACATCTTTGACTGGTTAACTTATGTCGAGAATCTAGG ]
[-] EMBL CD111426 [ CGTGAAGTTGGATGAGATCTGTACTAGTGAAACAATGGACCGCAGCAGACCGGTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAATCTGGCATCGTTTTGTTAGCTTGGTAAAGCTTCTTACGCACCTGGAGGTAACATCTTTGACTGGTTAACTTATGTCGAGAATCTAGGCGTGTTTCAGACAACCGTCTTTAAATTAACAACTTCTGGGGTAATACGATACATAGTGAAAATGATCAGAGCCTAATTTGTTCCGATCATCTTGTTTTGTATATTCTTTGTGTTCCGGCTTGATAAATAAGATAGTAGTTGATTGTAATTTCTAGCTTCACAAATCGTTTGGGAAGCCTAGTGTCCCGAAATCTAGAATGGCAGTCAGTCAGCTACTG]
[-] EMBL CD098402 [ CGTGAAGTTTGATTATATCGTTACTAGTGAAACAATTTACCGCA CAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAATCTGGCATCGTTTTGTTAGCTT GTAAAGCTTCTTACGCACCTGGAGGTAACATCTTTGACTGGTTAACTTATGTCGAGAATCTAGGCGTGTTTCAGACAACCGTCTTTAAATTAACAACTTCTGGGGTAATACGATACATAGTGAAAATGATCAGAGCCTAATTTGTTCCGATCATCTTGTTTTGTATATTCTTTGTGTTCCGGCTTGATAAATAAGATAGTAGTTGATTGTAATTTCTAGCTTCACAAATCGTTTGGGAAGCCTAGTGTCCCGAAATCTAGAATGGCAGTCAGTCAGCTACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8104#0 GAGGGCAACACTAAGCGATCAAACTTCATGTTTGAATTTAAGTTCTATGCGAACAGTGAT 60
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 GACAAAGAATTGAAGCGACATGACACTGTGACGTACTCTAGCTTAGTTCAATCACTCACT 120
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 TTAAGTGATGGTTACAGAGATGTTTTAAGTTTGGGCACAGATTTTCATGCAATCTCAAAT 180
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 GGTTCAAAACTGTGGTACATCGATGAATCTGTTCTCGATGATTATCTACGCAAACTGCCT 240
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 AAAAGTAAACTCAATGTATTCGATGCTGTTCACGCACATGAGGATGTCAAACCTGGCTTA 300
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 ATTGAAGGTGGTTTTACTCTGTGGGATGGCAGCAAGGATCTCGTCAATTACATATCAAAA 360
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 TATTTTTCGGGAAAGATGTGTGGAAAAAACGTCTTGGAATTAGGTTGTGGTTGTGGACTA 420
consensus_8104#1 ------------------------------------------------------------
consensus_8104#0 CCAGGTATATTCGCTGTCAAGGCTGGTGCCCGCTTAGTCAGGTTCCAGGATTACAATTCC 480
consensus_8104#1 -----------------------------------------------------CAATTCC 7
*******
consensus_8104#0 GAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGAT 540
consensus_8104#1 GAAGTTTTAAAATGCTGGACCATCCCTAATGTCATCATTAATTCAGGATCTCAAAACGAT 67
************************************************************
consensus_8104#0 GCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTT 600
consensus_8104#1 GCTGATAGCCACAATGAACACACACAGCTCGAATTCTTCAGTGGGGACTGGCTTCATCTT 127
************************************************************
consensus_8104#0 TCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACA 660
consensus_8104#1 TCGAAACTTTGGCAGTCAAGCGCCAACGTGAAGTTTGATTATATCTTTACTAGTGAAACA 187
************************************************************
consensus_8104#0 ATTTACCGCACAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAA 720
consensus_8104#1 ATTTACCGCACAGACCTTTATGAAAGATTACACACCATACTTGAAACGAGTCTATGTCAA 247
************************************************************
consensus_8104#0 TCTGGCATCGTTTTGTTAGCTTGTAAAGCTTCTTACGCACCTGGAGGTTTATAACTACAT 780
consensus_8104#1 TCTGGCATCGTTTTGTTAGCTTGTAAAGCTTCTTACGCACCTGGAGGTA-ACATCTTTGA 306
************************************************ * * **
consensus_8104#0 ATTTATAACTTGATATGATTAATATCTGCA-ATTGCAAAACATCGCGG--AAATCGTGAA 837
consensus_8104#1 CTGGTTAACTT-ATGTCGAGAATCTAGGCGTGTTTCAGACAACCGTCTTTAAATTAACAA 365
* ****** ** * *** * ** ** ** * * ** **** **
consensus_8104#0 TTATTAAACTGAACTGG---ATTGAAGACATGACTCGAATCCCG---ATTTCGGCAGTTT 891
consensus_8104#1 CTTCTGGGGTAATACGATACATAGTGAAAATGATCAGAGCCTAATTTGTTCCGATCATCT 425
* * * * * ** * * **** ** * ** ** * *
consensus_8104#0 TAATAAG-ATACAGAT-ATATTTCAG-----TAAATCCGG-AACGACTGGCTGCGAGC-- 941
consensus_8104#1 TGTTTTGTATATTCTTTGTGTTCCGGCTTGATAAATAAGATAGTAGTTGATTGTAATTTC 485
* * * *** * * ** * * ***** * * ** ** *
consensus_8104#0 -ATCCCATCAAATGACATTAGAAATATAGTTTTTTT---TTTAGAATAGTA--CATTTAT 995
consensus_8104#1 TAGCTTCACAAATCGTTTGGGAAGCCTAGTGTCCCGAAATCTAGAATGGCAGTCAGTCAG 545
* * ***** * *** **** * * ****** * * ** * *
consensus_8104#0 TTGTTGTAAATAAATTG 1012
consensus_8104#1 CTACTG----------- 551
* **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||