cluster # 8109

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Schistosoma mansoni
cluster # 8109 cluster # 8109 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8109#0 length = 547 sequences # 5

consensus_8109#1 length = 199 sequences # 1

consensusID : consensus_8109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 547
fasta sequence

                              [AAATAAGCAAACCATGTGCTGCACTATTACGTGGTTTATTAAAACGGAACCCTTCTGAACGATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAAG]

[+] EMBL CD116824             [AAATAAGCAAACCATGTGCTGCACTATTACGTGGTTTATTAAAACGGAACCCTTCTGAACGATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAA ]
[-] EMBL CD117477             [ AATAAGCAAACCATGTGCTGCACTATTACGGGGTTTA TAAAACGGAACCCTTCTGAACGATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAAG]
[-] EMBL CD117760             [            CATGTGCTGCACTATTACGTGGTTTATTAAAACGGAACCCTTCTGAACGATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAAG]
[-] EMBL CD117753             [                                               AACCCTTCTGAACGATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAAG]
[-] EMBL CD117782             [                                                                                     ACATCCATTCATTGATTTAGATCATGCACCATCAGCACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGGGGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCATATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATTTACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTTCATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTGATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCATTGAAAAG]




>consensus_8109#0
AAATAAGCAAACCATGTGCTGCACTATTACGTGGTTTATTAAAACGGAACCCTTCTGAAC
GATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAG
CACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGG
GGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCAT
ATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATT
TACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTT
CATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTG
ATCCTATTGTTCCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGGATT
CATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTATCAATCTTCAT
TGAAAAG

consensusID : consensus_8109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [CTCGCGGCCAGAATTCGGTCCGAGGCGGATGAATTGGATGCTTTTGGTTGGAAATGTATTGAGAAGCTTGAAAAGAAAGCTGGATTAGTAAGCAGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATNTCATCATCTACCAAAAGAAAAAGATGATTATTCAATCTTCATTTGAA]

[+] EMBL CD078091             [CTCGCGGCCAGAATTCGGTCCGAGGCGGATGAATTGGATGCTTTTGGTTGGAAATGTATTGAGAAGCTTGAAAAGAAAGCTGGATTAGTAAGCAGTTATAATGTATCACAACAGCCTAAAAATAATACGGATTCATCAAAGAAAGGCCTATNTCATCATCTACCAAAAGAAAAAGATGATTATTCAATCTTCATTTGAA]




>consensus_8109#1
CTCGCGGCCAGAATTCGGTCCGAGGCGGATGAATTGGATGCTTTTGGTTGGAAATGTATT
GAGAAGCTTGAAAAGAAAGCTGGATTAGTAAGCAGTTATAATGTATCACAACAGCCTAAA
AATAATACGGATTCATCAAAGAAAGGCCTATNTCATCATCTACCAAAAGAAAAAGATGAT
TATTCAATCTTCATTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8109#0      AAATAAGCAAACCATGTGCTGCACTATTACGTGGTTTATTAAAACGGAACCCTTCTGAAC 60
consensus_8109#1      ------------------------------------------------------------
                                                                                  

consensus_8109#0      GATTAAATCATGAACAGTTTTTTTCACATCCATTCATTGATTTAGATCATGCACCATCAG 120
consensus_8109#1      ------------------------------------------------------------
                                                                                  

consensus_8109#0      CACAAAGTCTGGACAAAGCTGCTGAATATCTTGAACGTGCGCCTCAATTAGAATCATTGG 180
consensus_8109#1      ------------------------------------------------------------
                                                                                  

consensus_8109#0      GGAAATTATGTGAAGCCTATGATTGTTATCTTGAAGGTTTAAATCACTTAATGGCTGCAT 240
consensus_8109#1      ------------------------------------------------------------
                                                                                  

consensus_8109#0      ATAATTATGAGCGATTGCGCTTCAAGAAATCACAAATACGAAAGCTGATAAAAGATCATT 300
consensus_8109#1      ------------------------------------------------------------
                                                                                  

consensus_8109#0      TACTAAAAACGGAATCGCTGAAATTGGAATTATGTCTACTTAGTCACACAGATATGACTT 360
consensus_8109#1      --------------------------------------------CTCGCGGCCAGAATTC 16
                                                                  * * * *  *  * * 

consensus_8109#0      CATCGTCGTCACCCCAATCAGAGCCAAAAATTCTTAACAGCCAAGCAGTTAATTTACCTG 420
consensus_8109#1      GGTCCGAGGCGGATGAATTGGATGC------TTTTGGTTGGAAATGTATTGAGAAGCTTG 70
                        **   * *     ***  **  *      * **    *  **    ** *    * **

consensus_8109#0      ATCCTATTGTT---CCAATGAAATGTTATAATGTATCACAACAGCCTAAAAATAATACGG 477
consensus_8109#1      AAAAGAAAGCTGGATTAGTAAGCAGTTATAATGTATCACAACAGCCTAAAAATAATACGG 130
                      *    *  * *     * * *   ************************************

consensus_8109#0      ATTCATCAAAGAAAGGCCTATTTCATCATCTACCAAAAGAAAAAGATGATTAT-CAATCT 536
consensus_8109#1      ATTCATCAAAGAAAGGCCTATNTCATCATCTACCAAAAGAAAAAGATGATTATTCAATCT 190
                      ********************* ******************************* ******

consensus_8109#0      TCATTGAAAAG 547
consensus_8109#1      TCATTTGAA-- 199
                      *****  **