These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 517 fasta sequence [CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAGTCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAAATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCAACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC] [+] EMBL CD189242 [CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAA ] [-] EMBL CD189466 [ TACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAA ] [-] EMBL CD183232 [ TATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAA ] [+] EMBL CD152103 [ CTTGAC TAGGTA TTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAGTCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAAATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCAACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC] consensusID : consensus_8118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 327 fasta sequence [GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA] [-] EMBL CD185778 [GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA] [-] EMBL CD186050 [ ACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8118#0 CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTT 60 consensus_8118#1 ---------------GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTT 45 * * * * * ** ******************** consensus_8118#0 CAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAA 120 consensus_8118#1 CAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAA 105 ************************************************************ consensus_8118#0 ATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCT 180 consensus_8118#1 ATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCT 165 ************************************************************ consensus_8118#0 CGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAG 240 consensus_8118#1 CGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAG 225 ************************************************************ consensus_8118#0 TAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTT 300 consensus_8118#1 TAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTT 285 ************************************************************ consensus_8118#0 AAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAG 360 consensus_8118#1 AAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA------------------ 327 ********************* ******************** consensus_8118#0 TCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAA 420 consensus_8118#1 ------------------------------------------------------------ consensus_8118#0 ATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCA 480 consensus_8118#1 ------------------------------------------------------------ consensus_8118#0 ACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC 517 consensus_8118#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||