These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [AACGTTACTCGGATCAAAGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAAAAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTACAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTGCTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAAAAGTTTAGTCATGCTACATCATATGATGAATGCATCCC] [+] EMBL BF936498 [AACGTTACTCGGATCAAAGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAAAAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTACAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTGCTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAAAAGTTTAGTCATGCTACATCATATGATGAATGCATCCC] consensusID : consensus_8121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 586 fasta sequence [TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC-CA-T-TGTGTATGGCACCC-ATTGAAAAAGGC-AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA] [+] EMBL CD192886 [TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CA T TGTGTATGGCACCC ATTGAAAAAGGC AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA] [+] EMBL CD196500 [ TCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CA T TGTGTATGGCACCC ATTGAAAAAGGC AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAG ] [+] EMBL CD063585 [ TGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTCACA TATGTGTATagg ] [-] EMBL CD063552 [ TAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CAGT TGTGTATGGCACCCTATTGAAAAAGGCTAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTG ] consensusID : consensus_8121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTATCAACACTTTTCACTGACTCATAGACATGTGACTAAACTCTCTTAATGTCGCTTGAAAAACTAGCTGGTATCTAAGTTCCTAAATATTAATCATGGAAATAGACCACAAAGTGTTCATTACGCTGCATTGAAAAATCTAACTTATAAGTTCCTAAATCATTCAAACCCAACTGGGTTCATGTACTCGTTATAAAGCTAATTGACTGTCTAAATATCAAACGTGGTTGGCGATCAAGAGATCTGATCGTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCTGGATACGGACTCTTAATGTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC] [+] EMBL CD129550 [TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTATCAACACTTTTCACTGACTCATAGACATGTGACTAAACTCTCTTAATGTCGCTTGAAAAACTAGCTGGTATCTAAGTTCCTAAATATTAATCATGGAAATAGACCACAAAGTGTTCATTACGCTGCATTGAAAAATCTAACTTATAAGTTCCTAAATCATTCAAACCCAACTGGGTTCATGTACTCGTTATAAAGCTAATTGACTGTCTAAATATCAAACGTGGTTGGCGATCAAGAGATCTGATCGTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCTGGATACGGACTCTTAATGTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8121#0 -------------------AACGT---TACTCGGATCAAA--GTCCATTCAAACTAATGA 36 consensus_8121#1 TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGA 60 consensus_8121#2 ------------------------------------------------------------ consensus_8121#0 ATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAAT 96 consensus_8121#1 ATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAAT 120 consensus_8121#2 ------------------------------------------------------------ consensus_8121#0 TTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCAT 156 consensus_8121#1 TTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCAT 180 consensus_8121#2 --------TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTAT--CAACACTTTTCAC 50 ***** * * **** **** * * *** ** ****** consensus_8121#0 GGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGG 216 consensus_8121#1 GGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGG 240 consensus_8121#2 TGA------CTCATAGACATGTGACT---AAACTCTCTTAATGTC-GCTTGAAAAACTAG 100 ** ** ** ** ** * * * ** **** ** **** * * consensus_8121#0 AGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCAT 276 consensus_8121#1 AGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCAT 300 consensus_8121#2 CTG-GTATCTAAG-----TTCCTAAATATTAATCA-TGGAAATAGACCA--CAAAGTGTT 151 * * ** **** ** **** ** *** * * * ** * ** ** * consensus_8121#0 CATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTA 336 consensus_8121#1 CATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTA 360 consensus_8121#2 CATTACGCTGCATTGAAAAATCTAACT-TATAAGTTCCTAAATCATTCAA-----ACCCA 205 **** * *** * ** * *** * * ** ** * * * * ** * consensus_8121#0 ACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAA 396 consensus_8121#1 ACTGTCTCGAATCAGCTGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAA 420 consensus_8121#2 ACTGGGTTCATGTACTCG-TTATAAAGCTAATTGACTGTC-TAAATATCAAACGTGGTTG 263 **** * * * * * ** * * *** * * * ** ** * * * consensus_8121#0 AAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTC 456 consensus_8121#1 AAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTC 480 consensus_8121#2 GCGATCAAGAGATCTGATC--GTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCT- 320 * * ** * ** * ** * **** * * * **** ** consensus_8121#0 CAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTC 516 consensus_8121#1 CAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTC 540 consensus_8121#2 --GGATACGG-ACTCTTAATGTGTCCATTCAAACTAATGAATCTCAC--AAGAGAAGTCG 375 * * ** *** * * ** *** * * ** * * ** consensus_8121#0 TTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTA 576 consensus_8121#1 TTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA-------------- 586 consensus_8121#2 ATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC--------------------- 414 * * ** ** * * * * * ** * * * consensus_8121#0 CAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTG 636 consensus_8121#1 ------------------------------------------------------------ consensus_8121#2 ------------------------------------------------------------ consensus_8121#0 CTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAA 696 consensus_8121#1 ------------------------------------------------------------ consensus_8121#2 ------------------------------------------------------------ consensus_8121#0 AAGTTTAGTCATGCTACATCATATGATGAATGCATCCC 734 consensus_8121#1 -------------------------------------- consensus_8121#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||