These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 876 fasta sequence [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGATTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAATAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCA-TTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAG-TATCGATAAGTAT-TATAGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA] [+] EMBL BF936445 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGATTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAATAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCA TTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAG TATCGATAAGTAT TATg ] [+] EMBL AA999277 [ TTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAADTAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCATTTTCTCATA ] [-] EMBL CD136764 [ GCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATA ] [+] EMBL CD190861 [ ATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGCTATCGATAAGTATATA AGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA] [-] EMBL CD078075 [ TATATAAAG TATCGATAAGTA TATATGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACATGTGTT CTTCCcctc ] consensusID : consensus_8123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGAATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAANNNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATTTTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAA] [-] EMBL AA629473 [ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGAATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAANNNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATTTTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8123#0 ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGAT 60 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 TACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTA 120 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 GTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAA 180 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 TAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAAC 240 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 TATAAAACACCATTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTT 300 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 CCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGT 360 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 GAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGA 420 consensus_8123#1 ---------------------ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGA 39 **** * ************** ******** **** ** consensus_8123#0 ATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTT 480 consensus_8123#1 ATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAAN 99 ** ******* ** ********************************* ***** ** consensus_8123#0 TTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATT 540 consensus_8123#1 NNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATT 159 ** ************************* ***************************** consensus_8123#0 TTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTT 600 consensus_8123#1 TTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTT 219 ***** ****************************************************** consensus_8123#0 GGCCAGTTGTATATAAAGTATCGATAAGTATTATAGGAATAAGGTTCGGAGAGATCGTTA 660 consensus_8123#1 GGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTA 279 ******************************* ************************* consensus_8123#0 GCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATT 720 consensus_8123#1 GCAATGAGATTGATAATGCTATTTAA---------------------------------- 305 ************************** consensus_8123#0 TTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACAT 780 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 TTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCC 840 consensus_8123#1 ------------------------------------------------------------ consensus_8123#0 AGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA 876 consensus_8123#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||