These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1538 fasta sequence [TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT] [-] EMBL CD153041 [TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT ] [-] EMBL CD153129 [ TCATATAAGAGAATCGCCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAGAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT ] [+] EMBL CD167797 [ CTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATA ] [+] EMBL AW017215 [ CAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCG ] [-] EMBL CD123607 [ CAACTAATCGTTTGTCACTTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGTTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT] consensusID : consensus_8143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC] [-] EMBL CD125828 [TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8143#0 TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCT 60 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 CTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACT 120 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 ACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAA 180 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGT 240 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGT 300 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAAT 360 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 CCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTT 420 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 GCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTT 480 consensus_8143#1 ---------------------------------------------------------TTT 3 *** consensus_8143#0 ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 540 consensus_8143#1 ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 63 ************************************************************ consensus_8143#0 ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 600 consensus_8143#1 ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 123 ************************************************************ consensus_8143#0 CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 660 consensus_8143#1 CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 183 ************************************************************ consensus_8143#0 CATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 720 consensus_8143#1 CATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 243 ************** ********************************************* consensus_8143#0 CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTA 780 consensus_8143#1 CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTA 303 *************************************************** ******** consensus_8143#0 GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAAT 840 consensus_8143#1 GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAAT 363 ************************************** ********************* consensus_8143#0 AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 900 consensus_8143#1 AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 423 ************************************************************ consensus_8143#0 GCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 960 consensus_8143#1 GCACAGCTAGGCGAAATCGTGA-CATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 482 ********************** ************************************* consensus_8143#0 TTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGT 1020 consensus_8143#1 TTGCTGATTAGTCTTTGTGAATGTATATTCTG--CATTTCGGCGTG-TCTGCGGGATCCT 539 ******************************** ******** * ** *** * consensus_8143#0 TTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCAT 1080 consensus_8143#1 C----------------------------------------------------------- 540 consensus_8143#0 TATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAAT 1140 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 GGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCT 1200 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 ACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATG 1260 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 ATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTAT 1320 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 GTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATT 1380 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCG 1440 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTA 1500 consensus_8143#1 ------------------------------------------------------------ consensus_8143#0 TTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT 1538 consensus_8143#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||