These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [CCTCCAGGCCAANAATTCGGCACGAGGCACATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTAC-TGTTACTATTTTGGNTGTCANNGTGCTGTCTTG-AC-TACTTCTTTTGGA-CTC-ATCC-TTTATATAT-C-CAT-ACA-TTATTC-TA-TCATTT-ATATCATGTATT] [+] EMBL CD080117 [CCTCCAGGCCAANAATTCGGCACGAGGCACATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTAC TGTTACTATTTTGGNTGTCANNGTGCTGTCTTG AC TACTTCTTTTGGA CTC ATCC TTTATATAT C CAT ACA TTATTC TA TCATTT ATATCAT ] [-] EMBL CD073018 [ TATTTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGATTGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTTCAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGACTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCATTCTAGTTAT CATGTGTTTGTTTATTCAA GGGGGGTTATTATGATCTCTTTTCTGTGTTTTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTATGCATCATTCTGTTTTTAGGCGTTGTTTATTTTTATTATTAATAATTACCTGTTTCACCTTTTACTTGTTACTATTTTGGTGGTCAGGTTGCTGTCTTGTACTTACTTCTTTTGGATCTCTATCCTTTTATATATACACATAACATTTATTCTTATTCATTTAATATCCAGTATT] consensusID : consensus_8157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 603 fasta sequence [GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGCGTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCAATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTATTTT] [+] EMBL CD078551 [GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGCGTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCAATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATTATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTATTTT] [+] EMBL CD167702 [ gATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTACTAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGAACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCT ] [-] EMBL CD192797 [ GGATCAAATTATCGAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTC ] [+] EMBL CD131484 [ GAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTACATGGACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATCTAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTACATCATCTCTTGCCTAAATTGTATAATCTCATAGTAAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8157#0 ------------------------------------------------------------ consensus_8157#1 GAGAGATATTCAGGTTTGGTTAGGTGGACTTTTTATGCCTGAGGCTTACATTACAGCTAC 60 consensus_8157#0 ------------------------------------------------------------ consensus_8157#1 TAGACAATTTGTTGCTCAATCTAATGGTTGGGCTCTTGAAGAATTATACTTAGATGTGGA 120 consensus_8157#0 ------------------------------------------------------------ consensus_8157#1 ACTTGTAATGATAGAAAAAGGTAAGAAACCACCTCAACTTCCTTCATCAAATTCTGGAGC 180 consensus_8157#0 ------------------------------------------------------------ consensus_8157#1 GTTTGTTGTTCGAGATTTATGGTTAATGGGTGCAGAACCGTTGAACGCAACTACAATCCA 240 consensus_8157#0 ------------------------CCTCCAGGCCAANAATTCGGCACGAGGCACATTATC 36 consensus_8157#1 ATTATCAAGTTCCATTTCAGTTGAACTCCCAGTGACAGTATTAAAGTGGATCAAATTATC 300 **** * * * * ** ****** consensus_8157#0 GAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTA 96 consensus_8157#1 GAATGATGAACGAGTTGAACGGTTCTTGGAGAAAGAAGGTAATGTACGGTTACCAGTCTA 360 ************************************************************ consensus_8157#0 CATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATC 156 consensus_8157#1 CATGAACGGTTCGCGTAATGTCGTACTATTCACCTTGCAAATGATGACCTCTGAATCATC 420 ************************************************************ consensus_8157#0 TAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATA 216 consensus_8157#1 TAATCGTTTCTACGAACGTGGTGTTGCTTTCCTTGCATCATCTCTTGCCTAAATTGTATA 480 ************************************************************ consensus_8157#0 ATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATT 276 consensus_8157#1 ATCTCATAGTAAAATGATGGGACGGAAAAAAAAAGCATGACTCTTCATTTTTCAACTATT 540 ************************************************************ consensus_8157#0 ATTGGCGTTTACTGTTACGAATAAGAGATAAAAAGAGGACCAGTACTTTGTTATCATTAT 336 consensus_8157#1 ATTGGCGTTTACTGTTACGAATAAGAGATAANAAGAGGACCAGTACTTTGNTATCATTAT 600 ******************************* ****************** ********* consensus_8157#0 TTTGCGCCAATGTATTCATTATTAAAAAAAGATGTAATTCATTTGATGAAGCGATCAGAT 396 consensus_8157#1 TTT--------------------------------------------------------- 603 *** consensus_8157#0 TGTTTTATGTTGTTGAATTATCCTACTATTTTTTAGTATTTTATGAGTTTCTATAACTTT 456 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 CAAGCTTTTTTTCCCTCTCTTTCTCTCAATTATTGTCTGCCTGTTTGTCCAATTATTTGA 516 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 CTTTCTACATATCTATCAATGGTTTACCGGTCACTATTCTGCTACACTAGATTGCTTCAT 576 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 TCTAGTTATNCATGTGTTTGTTTATTCAAGGGGGGGTTATTATGATCTCTNTTCTGTGTT 636 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 TTGTCTAGTTTATAACAATATTTCCTCTTTTGTATGACTTACAAAGGACAGGAACATTTA 696 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 TGCATCATTCTGTTTTTANGCGTTGNTTATTTTTATTATTAATAATTACCTGTTTCACCT 756 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 TTTACTGTTACTATTTTGGNTGTCANNGTGCTGTCTTGACTACTTCTTTTGGACTCATCC 816 consensus_8157#1 ------------------------------------------------------------ consensus_8157#0 TTTATATATCCATACATTATTCTATCATTTATATCATGTATT 858 consensus_8157#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||