These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 765 fasta sequence [AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTCTATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA-TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT-GGCAAAACTAA-TTTT-TATGCATT-TTTACCCT--GTTTATTATAATCTGCTCAACA-TCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT] [+] EMBL CD082842 [AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTCTATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAANTAT AGCATACCAC ANAAAGCCGAGAGTTCATTATCGGTAACTNTGACTACATTGNTCCAGGTCATGGACCAGCCTTTTAAGTTACTAAAAAGTGGGCAAAACTAA TTNT TATGCATTNNTTACCCTNNGTTTA TAT ATCTGCTCAACA TCATTACA ] [+] EMBL CD152652 [ CAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGNGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTG ] [-] EMBL CD152893 [ AATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGCTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAAAACTAA TTTTGTATGCATT TTTACCCT GTTTATTATAATCTGCTCAACATTCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT] [-] EMBL CD076428 [ GTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAAAACTAATTTTT TATGCATT TTTACCCT GTTTATTATAATCTGCTCAACA Tt ] [-] EMBL CD152812 [ aATCAGACATATCAGTAATTGTGCAGCATATTGATCAATTCGTCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTGTAGTAACAA TATAAGCATCCAACAAAAAAGCTGAGAGTTCATTATCGGTAAC TTGAGTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAGAATTAA TTTTGTATGCATT TTTACCCT GTTTATTATAATCTGATCAACA T ] consensusID : consensus_8162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 64 fasta sequence [NCNACNNTAGATGATCCCCATGACTATAGAGAGATGCATTAGAAATAAAATAAATCCAAATTTG] [+] EMBL CD166913 [NCNACNNTAGATGATCCCCATGACTATAGAGAGATGCATTAGAAATAAAATAAATCCAAATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8162#0 AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTC 60 consensus_8162#1 ----------------------------------NCNACNNTAGATGATCCCCATGACTA 26 * ** * *** ** consensus_8162#0 TATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGA 120 consensus_8162#1 TAGAGAGATGCATTAGAAATAAAAT-AAATCCAAATTTG--------------------- 64 ** ** ** *** * * ** *** **** * *** consensus_8162#0 CAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGAC 180 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 CTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGC 240 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACG 300 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATC 360 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 TTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACT 420 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 CCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGG 480 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 AGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAG 540 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 ATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAATATAAGCATACAACAAAAAA 600 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 GCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTA 660 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 AAGTTACTAAAAAGTGGCAAAACTAATTTTTATGCATTTTTACCCTGTTTATTATAATCT 720 consensus_8162#1 ------------------------------------------------------------ consensus_8162#0 GCTCAACATCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT 765 consensus_8162#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||