These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTTTCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG] [+] EMBL CD114965 [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTTTCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG] [+] EMBL CD114984 [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTACTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATG ] consensusID : consensus_8164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTAATAACCCAGTTGGTGTTAACATCCTGAAATCCAGACTTGGAATGCGTTTACGAATGTCATCCCTGTGACTTTCTTATTGTACATGATAAGTCGTCTTACTGAACGCTAGATTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAACTACACAGCAGCCTGAACACGAGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAAAAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCGAAAAATTCTGGAATGCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT] [-] EMBL CD166806 [TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTAATAACCCAGTTGGTGTTAACATCCTGAAATCCAGACTTGGAATGCGTTTACGAATGTCATCCCTGTGACTTTCTTATTGTACATGATAAGTCGTCTTACTGAACGCTAGATTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAACTACACAGCAGCCTGAACACGAGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAAAAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCGAAAAATTCTGGAATGCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT] consensusID : consensus_8164#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 427 fasta sequence [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG-TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA] [+] EMBL CD124110 [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGCTTATGTTACTTCTATTCTACTCATTGCTCTTTTTTACAGATTATTAAAATAAGCTATTAGCTCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGATCCTAATATCTTCTAGTAACTCCCAAGCTAAATCTACACAGCGACTTGAACACGATAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGGCTCTGTACAGAGAATCTACGGTTTTCATAGTATTGTAGATGGCCTTGTGTTTCCTCAAAAATTCTGGAATGTTACTAAGCATATTAGTATTATAAGTAACCATCCAATCAGAAACTCACCATGTGACTTTCCACTTTCTATATGCTTCTGGCATAACTTATAGTGA] [+] EMBL CD124124 [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATACGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA] [+] EMBL CD124164 [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8164#1 ------------------------------------------------------------ consensus_8164#2 ------------------------------------------------------------ consensus_8164#0 AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAA 60 consensus_8164#1 ---------------TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTA 45 consensus_8164#2 ---------------TTCGAAATAAACATATTT-----TATTTGATAAAAAACAATAAAA 40 consensus_8164#0 ACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCAT 120 * * * * * * * * *** consensus_8164#1 ATAACCCAGTTGGTGTTAACATCCTGAAATCCA---GACTTGGAATGC-GTTTACG--AA 99 consensus_8164#2 TGGAATAAGTTTATGTTACTTCTATTCAACTCAT-TGTTCTTTTTTACAGATTATT--AA 97 consensus_8164#0 ATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTAT 180 * * * * * * * * * * *** * consensus_8164#1 TGTCATCCCTGTGACTTTCT----TATTGTACATGATAAGTCGTCTTACTGAACGCTAGA 155 consensus_8164#2 AAGAAGCTAT-TAGTCCGAT----TCGTATAT-TGATAAGTCTCCTAACTGAACGCTACA 151 consensus_8164#0 GAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGA 240 * * * * * * ********* ** ******* * * * consensus_8164#1 TTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAA-CTACACAGCAGCCTGAACACG 214 consensus_8164#2 TTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACG 211 consensus_8164#0 TTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACT 300 *** ******* *** ******** ****** *** ***** * * * ******* consensus_8164#1 AGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAA 274 consensus_8164#2 AGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAG 271 consensus_8164#0 AGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAG 360 ********** *** **** ******** ******* ***** ***** ******* consensus_8164#1 AAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCG-AAAAATTCTGGAAT 333 consensus_8164#2 AAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAAT 331 consensus_8164#0 TAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCG-GAAAATTCTGGAAT 419 ********* **** ** * ***** ** ******** * * ************* consensus_8164#1 GCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTT 393 consensus_8164#2 GTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTT 391 consensus_8164#0 GCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTT 479 * ** ******** * ******* ***** * **************************** consensus_8164#1 CCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT 434 consensus_8164#2 CCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA----- 427 consensus_8164#0 TCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG------ 514 ******************** * **** ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||