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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1176 fasta sequence
[AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCACTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTCTTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGATAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGTTGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATTATATG]
[+] EMBL AI067991 [AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCACTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTCTTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGATAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGC ]
[+] EMBL CD081219 [ GGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGTTGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTNTCATGCTTGGTATTCTGACTTGTTTACGAAAGC ]
[-] EMBL CD155418 [ cTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATACTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA ]
[-] EMBL CD131101 [ ATGTGGACTTAAACTTGCCATCANACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTNGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTNATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATTATATG]
consensusID : consensus_8168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence
[TTCGGCACGAGGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA]
[+] EMBL CD083715 [TTCGGCACGAGGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA]
[+] EMBL CD133252 [ aATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATATTAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8168#0 AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCA 60
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 CTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTC 120
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGA 180
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGT 240
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGA 300
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGA 360
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 GGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAG 420
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACA 480
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGAC 540
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 AGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGT 600
consensus_8168#1 ------------------------------------------------------------
consensus_8168#0 TGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATC 660
consensus_8168#1 --------------------------------------------------TTCGGCACGA 10
***
consensus_8168#0 ATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCC 720
consensus_8168#1 GGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCC 70
**********************************************************
consensus_8168#0 ACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGG 780
consensus_8168#1 ACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGG 130
************************************************************
consensus_8168#0 TCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGG 840
consensus_8168#1 TCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGG 190
************************************************************
consensus_8168#0 ACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTA 900
consensus_8168#1 ACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTA 250
************************************************************
consensus_8168#0 TCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTG 960
consensus_8168#1 TCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTG 310
************************************************************
consensus_8168#0 TATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGT 1020
consensus_8168#1 TATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGT 370
************************************************************
consensus_8168#0 ACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCG 1080
consensus_8168#1 ACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCG 430
************************************************************
consensus_8168#0 AGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA 1140
consensus_8168#1 AGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA 490
************************************************************
consensus_8168#0 TGCAGAACAAGTGGAACAGATGGAACCCATTATATG----------------------- 1176
consensus_8168#1 TGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA 549
****************************** *****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||