These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAGGCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATAACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACAGAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAACAGTATACTAGTACGACCACCTATAAGGATTTACCAAAAGTACGAACCTACTTTCCTAAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATTCATAACCTTTTCTTTAAG] [+] EMBL CD179682 [TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAGGCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATAACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACAGAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAACAGTATACTAGTACGACCACCTATAAGGATTTACCAAAAGTACGAACCTACTTTCCTAAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATTCATAACCTTTTCTTTAAG] consensusID : consensus_817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [ATATCATGGGATAAGGTGAAGTATGGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTTCCTCAGTGGAAGAAACTGTCGCCTTTATGCTATTTGTCTGAGGAGACACCTTACTATCATCACACCTTTATACAGTCAGCAGTACGACTTCACCTTCGGACCTTGAGTTTGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCTGGTATGGTAGGATCTTGAGAAACGATTGTCCCTGCCAGTATAGCTCGACTGGTTCATCACGATAGGCAAGCCCGACCACCACGTCA] [+] EMBL CD134435 [ATATCATGGGATAAGGTGAAGTATGGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTTCCTCAGTGGAAGAAACTGTCGCCTTTATGCTATTTGTCTGAGGAGACACCTTACTATCATCACACCTTTATACAGTCAGCAGTACGACTTCACCTTCGGACCTTGAGTTTGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCTGGTATGGTAGGATCTTGAGAAACGATTGTCCCTGCCAGTATAGCTCGACTGGTTCATCACGATAGGCAAGCCCGACCACCACGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_817#0 TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAG 60 consensus_817#1 ----------------------------------------------------ATATCATG 8 * *** * consensus_817#0 GCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATA 120 consensus_817#1 G-------GATAAGGTGAAGTAT-GGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTT- 59 * *** *** ****** **** * ** * * * * * * * consensus_817#0 ACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACA 180 consensus_817#1 -CCTCAGTGGAAGAAACTGTCGCC---TTTATGCTAT---TTGTCTGAGGAGACACCTTA 112 *** * * *** * * * * * * ** * * **** ** * ***** * consensus_817#0 GAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAAC 240 consensus_817#1 CTATC---ATCACACCTTTATACAGTCAGC-AGTACGACTTCACCTTCGGACCTTGAGTT 168 * * * * *** ** ** * *** ** * * * ** consensus_817#0 AGTA--TACTAGTACGACCACCTATAAG--GATTTACCAAAAGTACGAACCTACTTTCCT 296 consensus_817#1 TGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCT--GGTATGGTAGGATCTTGAG 226 ** * **** *** * * * ** * * *** * * ** consensus_817#0 AAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATT--CATAA 354 consensus_817#1 AAACGATTGTCC-CTGCCAGTATAGC--TCGACTGGT-TCATCACGATAGGCAAGCCCGA 282 *** * *** * * *** * ** ** * * **** * * consensus_817#0 CCTTTTCTTTAAG 367 consensus_817#1 CCACCACGTCA-- 293 ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||