These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 962 fasta sequence [CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTGGGCATTGCCCCACACAGTTGCAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGA-TGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAGGTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAA] [+] EMBL CD063853 [CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTG ] [+] EMBL CD199779 [ AATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATGGGAATTTGGGCATTGCCCCACACAGTTGCAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGA TGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGC ] [+] EMBL CD085519 [ aaaaacaCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGATTGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAGGTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAA ] [-] EMBL CD066030 [ ACT CCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAA] consensusID : consensus_8181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAATAGACTTGAGGAGAGGAACA] [-] EMBL CD127799 [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAATAGACTTGAGGAGAGGAACA] consensusID : consensus_8181#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 108 fasta sequence [GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGGTTGGTGATACGTCTTCGACGGA] [+] EMBL CD150522 [GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGGTTGGTGATACGTCTTCGACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8181#0 CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATG 60 consensus_8181#1 -----CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATG 55 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 TTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAA 120 consensus_8181#1 TTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAA 115 consensus_8181#2 ---------GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGG-AAATCACAACA 50 * * * ** **** **** * *** * * * * ** ** * * consensus_8181#0 GCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCAT 180 consensus_8181#1 GCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCAT 175 consensus_8181#2 GTTTACAATCACCTCACCCCACTTCCCATT------TCCAGGTTGGTGATACGTCTTCGA 104 * * **** * ** * *** * * ** ** * ** **** consensus_8181#0 TCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGT 240 consensus_8181#1 TCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGT 235 consensus_8181#2 CGGA-------------------------------------------------------- 108 * consensus_8181#0 CAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAA 300 consensus_8181#1 CAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAA 295 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 GTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCA 360 consensus_8181#1 GTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCA 355 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 AAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATC 420 consensus_8181#1 AAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATC 415 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 AGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTGGGCATTGCCCCA 480 consensus_8181#1 AGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCA 475 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 CACAGTTG-CAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAAT 539 consensus_8181#1 CACAGTTGTCAAGGTGGAATAGACT-TGAGGAGAGGAACA-------------------- 514 consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 AAAACAACCACTATAAACCAAACGTAATAGAAGATGTTCACGTTGGACAATAGAGACTTG 599 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 AGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAAT 659 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 TAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAG 719 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 GTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAA 779 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 GTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTAC 839 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 CACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTT 899 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 CCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGG 959 consensus_8181#1 ------------------------------------------------------------ consensus_8181#2 ------------------------------------------------------------ consensus_8181#0 GAA 962 consensus_8181#1 --- consensus_8181#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||