These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1177 fasta sequence [TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAAGAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAGAAGGTCAGAGTAGTCTGATGTATTCTTTCCCTGATGGCATAATAATAGGTCGTAAGCAATGCTCACAGTATACTCCTCATAGACATTTGAAGGGATCACATTAAATTTGGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT] [+] EMBL CD075371 [TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGT ] [+] EMBL CD074684 [ AAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAAAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGGGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAAAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTANCA ] [+] EMBL CD194052 [ TTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGNTCCATACATGTAGTC ] [-] EMBL CD080760 [ cTTATTGCCATATAATTCTCNTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAAGAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAGAAGGTCAGAGTAGTCTGATGTATTCTTTCCCTGATGGCATAATAATAGGTCGTAAGCAATGCTCACAGTATACTCCTCATAGACATTTGAAGGGATCACATTAAATTTGGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT] consensusID : consensus_8190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence [ATTATTTTCAAATTCATCAGAATGGCAGCATTANTCCAGTGAGTCACTATTGTCCTCACCATGAATACGATCATATCAGCAATGCTGCTTACTGTNCAGGTGTATGGTTCAGTTGATCAAAACGAATGGTGGCTGACTATTTTACTGTTCGTTCCCATAGAATGGTATGTAGGATCCCTGAAGGATGTAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGTTAATGGAGTTGATTCACTAGGTTCATATAGACTCTTTGGTGTTCCGGTTGCAGAGGCCATAATTGATTGATATGGTTCAATCAATTCATTCCAAATGCTACCCGTAGAAATCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTGAATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCCGATACCTAAGACCCGTCGGCAAAAAGCAATCTTCATCTCTAGTCGGTTGGTCATAACCTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAGGCCTCGTGCCGAATTNTTGGCTCCG] [-] EMBL CD081546 [ATTATTTTCAAATTCATCAGAATGGCAGCATTANTCCAGTGAGTCACTATTGTCCTCACCATGAATACGATCATATCAGCAATGCTGCTTACTGTNCAGGTGTATGGTTCAGTTGATCAAAACGAATGGTGGCTGACTATTTTACTGTTCGTTCCCATAGAATGGTATGTAGGATCCCTGAAGGATGTAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGTTAATGGAGTTGATTCACTAGGTTCATATAGACTCTTTGGTGTTCCGGTTGCAGAGGCCATAATTGATTGATATGGTTCAATCAATTCATTCCAAATGCTACCCGTAGAAATCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTGAATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCCGATACCTAAGACCCGTCGGCAAAAAGCAATCTTCATCTCTAGTCGGTTGGTCATAACCTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAGGCCTCGTGCCGAATTNTTGGCTCCG] consensusID : consensus_8190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATATTTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCATTTTACGAAATACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTTTGTGAATTGAATGCTACATTTACAAGTAGTAACTTGACATAGCAGAAGGAAGCAGTGGGCTATGAGACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGAATGAAACTATTTTCTTCTAGA] [+] EMBL CD197275 [GGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATATTTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCATTTTACGAAATACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTTTGTGAATTGAATGCTACATTTACAAGTAGTAACTTGACATAGCAGAAGGAAGCAGTGGGCTATGAGACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGAATGAAACTATTTTCTTCTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8190#0 TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACA 60 consensus_8190#1 -----------ATTATTTTCAAATTCATC-----AGAATG-GCAGC------ATTANTCC 37 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCT 120 consensus_8190#1 AGT-GAGTCA-CTA--TTGTCCTC--ACCAT-GAATA-CGATCA-TATCAG-CAATG-CT 86 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 GCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTAC 180 consensus_8190#1 GCTT-ACT-GTNCAGGTGTA--TGGTT-CAGTTGATC-AAAACGAATGG--TGGCTG-AC 137 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 TATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAG 240 consensus_8190#1 TATTT-TACTG-TTCGTTCCCATAGAAT-GGTAT-GTAGGATCCCT-GAAGGATGTAA-G 191 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 GGGCAGTACCTGAAC-TTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAA 299 consensus_8190#1 GGGCAGTACCTGAAC-TTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAA 250 consensus_8190#2 -GGTAATGAATGAATGCTTTATCCAATCCACAG---CAACTTCTGCCAGAAGAATATAGG 56 ** * * **** ** * ** * ** * * * ** * ** * consensus_8190#0 GTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCT 359 consensus_8190#1 GTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCT 310 consensus_8190#2 TTACATC---AATGAGAATGGTTTG---AAGATCATCTAAATTCCATCCAC-TTTCATTC 109 ** * * * ** * *** ** * ** ** ** ****** consensus_8190#0 GTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATA 419 consensus_8190#1 GTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATA 370 consensus_8190#2 ATATTACG------GCATACAATA----TTTGAAAACCAAACACAATAGTGAAATCGTTC 159 ** **** **** * *** * **** * ** **** * **** * consensus_8190#0 CTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAAT 479 consensus_8190#1 CTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAAT 430 consensus_8190#2 ACGTACATCAGCACATGCAATTTGAAATAAATTC-----GTTTTTCCCATTTTACGAAAT 214 ** **** * * ** * * * ***** **** consensus_8190#0 G-ATTCGTCTTTATTGCCATATAATTCTCCTAAG-ATAC-TAGTCATCTCATACCTGTTC 536 consensus_8190#1 G-ATTCGTCTTTATTGCCATATAATTCTCCTAAG-ATAC-TAGTCATCTCATACCTGTTC 487 consensus_8190#2 ACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTT 274 *** **** * * * * **** * * ** * ** *** *** * * ** consensus_8190#0 CATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAAC 596 consensus_8190#1 CATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAAC 547 consensus_8190#2 TGTGAATTGAATGCTACAT--TTACAAGTAGTAACTTGA-----CATAGCAGAAGGAAGC 327 * ** * * * *** * * **** ** ** * ** ** ** * consensus_8190#0 TGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATT 656 consensus_8190#1 TGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATT 607 consensus_8190#2 AGTGGGCTATGAG-ACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGA 386 * ** * * * *** ** * * * *** * ** * * ** consensus_8190#0 TCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGT 716 consensus_8190#1 TCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGT 667 consensus_8190#2 ATGAAACTATTTTCTTCTAGA--------------------------------------- 407 ** **** * * * consensus_8190#0 GGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAA 776 consensus_8190#1 GTTAATGGAGTTGATTCACTAGGTTCA-TATAGACTCTTTGGTGTTCCGGTTGC---AGA 723 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 GAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAG 836 consensus_8190#1 GGCCATA--ATTGATTGATATGGTTCAATCAATTCATTCCAAATGC-TACC-CGTAGAAA 779 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AAGGTCAGAGTAGTCTGATGTATTCTTT------CCCTGATGGCATAATAATAGGTCGTA 890 consensus_8190#1 TCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTG 839 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AGCAATGCTCA--CAGTATACTCCTCATAGACATTTGAAGGGA-TCACATTAAATTTGGT 947 consensus_8190#1 AATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCC 899 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATC 1007 consensus_8190#1 GATACCTAAGACCCGTCGGCAA---AAAGCAATCTTCATCTCTAGTCGGTTGGTCATAAC 956 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATAC 1067 consensus_8190#1 CTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAG 1016 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTG 1127 consensus_8190#1 GCCTCGTG----CCGAAT----TNTTGGCTCCG--------------------------- 1041 consensus_8190#2 ------------------------------------------------------------ consensus_8190#0 AAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT 1177 consensus_8190#1 -------------------------------------------------- consensus_8190#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||