These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1029 fasta sequence [CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTAGAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCAGATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGACGAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACACATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC-CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCANATCAAAAGA-CCCTGACCTT-AATACCTACACACTACATACAAAACTGTTCCTAAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGAAATAAATTATTTTTTG] [+] EMBL CD081363 [CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTAGAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCAGATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGACGAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACACATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCC ] [-] EMBL CD065757 [ TTCTTTTGCTGAACACACATCTGAAGGTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACGAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACACACTTACCGTCACT ] [+] EMBL CD185927 [ GGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCANATCAAAAGACCCCTGACCTT AATACCTACACACTACATACAAAACTGTTCCTAAGATTGA ] [-] EMBL CD075197 [ CAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCAAATCAAAAGA CCCTGACCTTAAATACCTACACACTACATACAAAACTGTTCCTAAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGAAATAAATTATTTTTTG] [-] EMBL CD125914 [ CCGTCATTCTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATT ] consensusID : consensus_8206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAATGTCGCAGGAGAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTATAGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCAGAGACCTATCCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACCGCGATATTCACAATCTCGAGATTTCGGAATTAC] [+] EMBL AI559070 [TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAATGTCGCAGGAGAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTATAGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCAGAGACCTATCCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACCGCGATATTCACAATCTCGAGATTTCGGAATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8206#0 CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTA 60 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCA 120 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGAC 180 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACA--CATCTGAAGTTGGAGAAA 238 consensus_8206#1 --------------------------TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAA 34 ************** ****************** consensus_8206#0 GTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGA 298 consensus_8206#1 GTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAA-TGTCGCAGGAGA 93 *********************************************** ************ consensus_8206#0 AAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAA-CAAAATGCTTCCTATGTAT 357 consensus_8206#1 AA-CCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTAT 152 ** ************************************* ******************* consensus_8206#0 AGAC-ACAGTGGGA-GTGGTTCAGGTGGATACGCGGCATG-TATTCTAAAGATGGCAGCA 414 consensus_8206#1 AGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCA 212 **** ********* ******** * ******** *** *** *************** consensus_8206#0 GAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGA-ACGTGTGTTAAC 473 consensus_8206#1 GA-GACCTAT-CCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACC 270 ** ** **** * ***** ****** ** ********** ** *** ******* * * consensus_8206#0 TCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCG 533 consensus_8206#1 GCGATATTCACAATCTCGAGAT--TTCGGAATTAC------------------------- 303 ** **** **** ******* * ******* consensus_8206#0 TAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACACCTTACCGTCACTTTGA 593 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAAC 653 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 TATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAAT 713 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCC 773 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACT 833 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 GTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGA 893 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 ATATATCANATCAAAAGACCCTGACCTTAATACCTACACACTACATACAAAACTGTTCCT 953 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGA 1013 consensus_8206#1 ------------------------------------------------------------ consensus_8206#0 AATAAATTATTTTTTG 1029 consensus_8206#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||