These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 808 fasta sequence [ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT] [+] EMBL CD196449 [ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTt ] [+] EMBL CD196583 [ACCAAATCCCTTCGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTC ] [-] EMBL CD196486 [ GGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT] [-] EMBL CD196663 [ GTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT] [-] EMBL CD196481 [ TTCATAATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTGGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT] consensusID : consensus_8226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTTATAATAGTCCCCGAACGACCAGCTGCCCAACATTTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCATCATGACGACCACCGATTCGAATACATGGCTGTGAG] [-] EMBL CD198005 [TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTTATAATAGTCCCCGAACGACCAGCTGCCCAACATTTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCATCATGACGACCACCGATTCGAATACATGGCTGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8226#0 ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTG 60 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 CCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAA 120 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 TCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAA 180 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 AATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACA 240 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 AATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGA 300 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 TGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGT 360 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 CGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATC 420 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 GCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACT 480 consensus_8226#1 ------------------------------------------------------------ consensus_8226#0 AACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTC 540 consensus_8226#1 -------------TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTC 47 * **** * * * *** * * * * ** ******* consensus_8226#0 AGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAA 600 consensus_8226#1 AGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAA 107 ************************************************************ consensus_8226#0 TATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACC 660 consensus_8226#1 TATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACC 167 ************************************************************ consensus_8226#0 TGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGAC 720 consensus_8226#1 TGAGAGCAAGCCTCTTTCT------TATAATAGTCCC-CGAACGACCAGCTGCCCAACAT 220 ******************* ** * **** * ** * * * * * consensus_8226#0 AGCAACAATTTTCATAGAA---CTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAA 777 consensus_8226#1 TTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCAT-CATGACGAC 279 *** *** * * * **** * * * ******* * ** * * consensus_8226#0 TAAC--TTTGAATAAAATAGGTATGGATAGTGT 808 consensus_8226#1 CACCGATTCGAATACA-TGGCTGTGAG------ 305 * * ** ***** * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||