These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [TCGAGGCAAGAATCGGCACGAGGCAAAAAATCCCAAAAAAGAAACACTAC-GACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAAAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGAAGTTTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTCCTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTTTCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAGC] [+] EMBL CD083420 [TCGAGGCAAGAATCGGCACGAGGCAAAAAATCCCAAAAAAGAAACACTAC GACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAAAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGAAGTTTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTCCTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTTTCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAGC] [+] EMBL CD120847 [ AACACTACTGACATGTCTTCCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAGAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGA ] consensusID : consensus_8249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 483 fasta sequence [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGA] [+] EMBL CD122897 [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGGACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAACAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATTTTTTCAACAAAATAGCTGATATAATAAG ] [+] EMBL CD123069 [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGGAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACACGATGCTCATGAATTTCTTAACTATCTTCTCAACAA ] [-] EMBL CD122742 [ AAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGCTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAGTGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGA] [+] EMBL CD156734 [ GTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8249#0 TCGAGGCAAGAATCGGCACGAGGCAAAAA-ATCCCAAAAAAGAAACACTACGACATGTCT 59 consensus_8249#1 -----GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCA 55 * * * ** *** ** * * * ** * ** * ** consensus_8249#0 TTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAA 119 consensus_8249#1 TTATGAGGTTTCTGG---AGTCTTTCCTTCGTATTAATTGCTTAA--AAATGGGGCTCAG 110 ** ** *** **** * ** * * * * * * *** * * * consensus_8249#0 GAAGT-TCATACAAAAGTTGAAGCGG--GAGAATGGATTATTTGATAACTATCTACAACA 176 consensus_8249#1 TAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTT 170 * * *** * * ** * * * * * * * * * * * consensus_8249#0 GGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGA 236 consensus_8249#1 TGG-GCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCT 229 * *** **** *** ** ** * ** ** * * *** * * consensus_8249#0 ACAACAA-CCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTT 295 consensus_8249#1 TCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAA------AAAATC 283 * ** *** * *** * * * * * * **** * * ** * * consensus_8249#0 CCGAAAGTAATAGAAAGCATAGTGGC-CGTAACTGGATTCATGAGATCTTTCAGGGAAGT 354 consensus_8249#1 CCAAAAA----AGAAACACTACTGACATGTCTTTCGGATCTTTTC-TATTCAGTCGTATC 338 ** *** ***** ** ** * ** * * ** * * ** * * consensus_8249#0 TTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTC 414 consensus_8249#1 TCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAG--CGG 396 * * * ** * * ** * * * * **** ** **** *** consensus_8249#0 CTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTT 474 consensus_8249#1 GAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTT 456 ** ** * * *** * * * *** * * * *** * ** consensus_8249#0 TCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAG 534 consensus_8249#1 CTCAACA---AAATA----GCTGATATAATAAGA-------------------------- 483 * * * *** * * * * * ****** consensus_8249#0 C 535 consensus_8249#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||