These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence [GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACATAGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAGTATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCATATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGATGGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTTTCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGATTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA] [+] EMBL BG932630 [GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACATAGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCT ] [+] EMBL CD138033 [ TTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATC ] [-] EMBL CD138057 [ TATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCTACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATCATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTT ] [-] EMBL CD137935 [ TATGGCACATCAGAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCA ] [+] EMBL CD083407 [ gCTAAACCTAATCAAATTCAAGACTCGGCAC AATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAGTATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCATATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGATGGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTTTCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGATTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA] consensusID : consensus_8254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [ACTCTTTTTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGTCAAATATATTGATTACTTTGAACTTGGGTTTACAGATTGTTGATTGTCGATTATCAATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA] [+] EMBL CD166362 [ACTCTTTTTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGTCAAATATATTGATTACTTTGAACTTGGGTTTACAGATTGTTGATTGTCGATTATCAATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8254#0 GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACAT 60 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 AGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTT 120 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 TTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCA 180 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 GTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATT 240 consensus_8254#1 --------------------ACTCTTT-TTCCTTCCAGTTTGACTCAACCTAATCAAATT 39 ** * ******************************** consensus_8254#0 CAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAG 300 consensus_8254#1 CAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAG 99 ************************************************************ consensus_8254#0 TCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTA 360 consensus_8254#1 TCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAG--TCAAATA 157 *************************************************** ** * ** consensus_8254#0 CCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAG 420 consensus_8254#1 TATTGATTACTTTGAACT-TGGGTTTACAGATTGTTG--------ATTGTCGATTATCA- 207 * * * * ** ** * *** * *** * ** * ** consensus_8254#0 TATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCAT 480 consensus_8254#1 -ATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA----- 261 **** *** * * ** ** *** * *** * * *** * consensus_8254#0 ATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGAT 540 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 GGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTT 600 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 TCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGA 660 consensus_8254#1 ------------------------------------------------------------ consensus_8254#0 TTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA 717 consensus_8254#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||