These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 912 fasta sequence [TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT-GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATCCCTCGTGCCGAATTCTGGCCTGCG] [+] EMBL AI395008 [TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGGCAAAACGGAGAGAACTGGGTTCAAGGTAAA ] [+] EMBL AI395170 [ TTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGTTGC ] [+] EMBL CD074875 [ GATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCG ] [-] EMBL CD078194 [ ATCTTCCTCCTGGTCGAGTTNTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATCCCTCGTGCCGAATTCTGGCCTGCG] consensusID : consensus_8264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [NNNNNNNNNNNNNATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTGGACATCGCCTC] [-] EMBL CD081049 [NNNNNNNNNNNNNATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTGGACATCGCCTC] [-] EMBL CD146312 [ TCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8264#0 TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATA 60 consensus_8264#1 ------------------------------------------------------------ consensus_8264#0 TGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTT 120 consensus_8264#1 ------------------------------------------------------------ consensus_8264#0 AAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGA 180 consensus_8264#1 ------------------------------------------------------------ consensus_8264#0 ATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAAC 240 consensus_8264#1 ------------------------------------------------------------ consensus_8264#0 TGAGAGAACTGGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATAT 300 consensus_8264#1 -------------------------------------------NNNNNNNNNNNNNATAT 17 **** consensus_8264#0 TTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGT 360 consensus_8264#1 TTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGT 77 ***************************** ***************************** consensus_8264#0 TGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCC 420 consensus_8264#1 TGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCC 137 ************************************************************ consensus_8264#0 TGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCT 480 consensus_8264#1 TGCTCAACATTATGTTCAACTTC---------------------------TTCCCCTTCT 170 *********************** ********** consensus_8264#0 TCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGT 540 consensus_8264#1 TCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGT 230 ******************************* **************************** consensus_8264#0 TGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTG 600 consensus_8264#1 TGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTG 290 ************************************************************ consensus_8264#0 GCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCT 660 consensus_8264#1 GCACT-------------------------GAAGCGGCAGAAAGCCTGGCCGCTAAATCT 325 ***** ****************************** consensus_8264#0 TCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTAT 720 consensus_8264#1 TCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTAT 385 ************************************************************ consensus_8264#0 GGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTA 780 consensus_8264#1 GGTGTTTTTGGTTCTTCAATTTTCATATGACCATA------------------------- 420 *********************************** consensus_8264#0 GCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTC 840 consensus_8264#1 GCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTC 480 ************************************************************ consensus_8264#0 TTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATC-CCTCGTGCCGA 899 consensus_8264#1 TTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCT-GGACATCGCCTC------- 532 **************************************** ******* **** consensus_8264#0 ATTCTGGCCTGCG 912 consensus_8264#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||