These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence [CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCCGTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGCCAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAGCTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCGATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACACCCACCAGAAACTAGTCTTTTGATAGGCGGAATCATAGTATTTGTTGATGTTGTTGTTGCCAACGTCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTTTCGTCTGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA] [+] EMBL CD062217 [CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCCGTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGCCAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAGCTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCGATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACACCCACCAGAAACTAGTCTTTTGATAGGCGGAATCATAGTATTTGTTGATGTTGTTGTTGCCAACGTCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTT ] [-] EMBL AI068241 [ GGAGGTTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTTTCGTCTGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA] [-] EMBL AI068287 [ ACGCCAAGAGTTTGTTTCGTCTGATATAAGGAT GAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACANACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA] consensusID : consensus_8285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 524 fasta sequence [CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGCATTGATGACCTAGTTGTGTACAGGACAAAGAACCAAGAGAATCGACACACGAATACATATACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCAGCAGCCAATTGTGTGGTAGGTTGATCTGACGTTTGACTATTCCCTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCG-TTATTGCCGTCGATCGCCTCGTGCCGAAT] [-] EMBL CD077373 [CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGCATTGATGACCTAGTTGTGTACAGGACAAAGAACCAAGAGAATCGACACACGAATACATATACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCAGCAGCCAATTGTGTGGTAGGTTGATCTGACGTTTGACTATTCCCTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCG TTATTGCCGTCGATCGCCTCGTGCCG ] [-] EMBL CD077644 [ TCTGACGTTTGACTATCCNNTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGC CGCCTCGTGCCGAAT] consensusID : consensus_8285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TCTGGAGGAGATAATAAGGTTACACTTGGGGAAGGAAAATTTAGAAGGAACCTGGATTGGTTNGAGTGAAATNGCACGTGGNGNTCATGANGCATCCGGTTTANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTGCTNAACAGCCACCCAG] [+] EMBL SM6891 [TCTGGAGGAGATAATAAGGTTACACTTGGGGAAGGAAAATTTAGAAGGAACCTGGATTGGTTNGAGTGAAATNGCACGTGGNGNTCATGANGCATCCGGTTTANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTGCTNAACAGCCACCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8285#0 CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGA 60 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTC 120 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCC 180 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGC 240 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAG 300 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCG 360 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 ATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACAC 420 consensus_8285#1 ------------------------------------------------------------ consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CCACCAGAAACTAGTCTTTTGATAGGCGGAAT-CATAG--TATTTGTTGATGTTGTTGTT 477 consensus_8285#1 -CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGC 59 consensus_8285#2 -----------------TCTGGAGGAGATAAT-AAGGTTACACTTGGGGAAGGAAAATTT 42 * * *** * * ** consensus_8285#0 GCCAACG-TCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATT 536 consensus_8285#1 ATTGATGACCTAGTTGTGTACAGGACAAAGA---ACCAAGAGAATC---GACACACGAAT 113 consensus_8285#2 AGAAGGAACCTGGATTGGTTNGAGTGAAATNGC-ACGTGGNGNTCATGANGCATCCGGTT 101 * * * * * * * ** * * consensus_8285#0 AACACC--AACGGAGTGTGCCTCTGGG-ATTCGAAAGGCACGCCAAGAGTTTGTTTCGTC 593 consensus_8285#1 ACATAT--ACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCA 171 consensus_8285#2 TANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTG 161 * ** * * ** consensus_8285#0 TGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGT-CCATAAG 652 consensus_8285#1 GCAGCCAATTGTGTGG-TAGGTTGATCTGACGTTTGAC-TATTCCCTTCAGTTCCAATTA 229 consensus_8285#2 CTNAACAGCCACCCAG-------------------------------------------- 177 * consensus_8285#0 AATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTT 712 consensus_8285#1 AACCGGATGCCTCATGAGCACCAC-----GTGCAATTTCACTCAAAGCAATCCAGGTTCC 284 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGG 772 consensus_8285#1 TTCTAAAT----------TTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCG 334 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGAT 832 consensus_8285#1 CTAAAATATTCCCAGTTACAGACCATGA--AAC----ATTCCAAACAACATCGGGATAA- 387 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 CTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAAT 892 consensus_8285#1 ---GTA-------TATAAGA--TGGTTGGACGCCA-AAATGTAGAATATTGTG-TTGATT 433 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 GGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCA 952 consensus_8285#1 GA------AAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTAT 487 consensus_8285#2 ------------------------------------------------------------ consensus_8285#0 TATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA 991 consensus_8285#1 TATTATCGTTATTGCCGTCGATCGCCTCG-TGCCGAAT- 524 consensus_8285#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||