These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1089 fasta sequence [TCCATTGGCTACAGTCATAGTATGGCCTAAAGTTTAAACATTGACCTCATCCCACCGAAGTTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTAGGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATATACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTCATGAAGCCATAAGTTCTAACAAACCTCTCGCTAACAATAGCAAGAAGGCTAAAAGACTTAGTGTGGATACTCAGCGTTCACTGTAAGTTACTAAATATAATGCATTACTTTTTAGAGCTACAATACTTCCACGCGGCACTCAAAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCCGCAGATAGTATAACGTCTGAGATTATTGTACAGTCCTATGATCGAATATGTACCTATTTGTATTATTTTCGTTACTTATTCAATGTAAATAACTAAATTTTTGGTTTATTAAGAAATA] [+] EMBL CD082355 [TCCATTGGCTACAGTCATAGTATGGCCTAAAGTTTAAACATTGACCTCATCCCACCGAAGTTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTAGGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATATACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAcana ] [-] EMBL CD075956 [ TTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTCATGAAGCCATAAGTTCTAACAAACCTCTCGCTAACAATAGCAAGAAGGCTAAAAGACTTAGTGTGGATACTCAGCGTTCACTGTAAGTTACTAAATATAATGCATTACTTTTTAGAGCTACAATACTTCCACGCGGCACTCAAAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCCGCAGATAGTATAACGTCTGAGATTATTGTACAGTCCTATGATCGAATATGTACCTATTTGTATTATTTTCGTTACTTATTCAATGTAAATAACTAAATTTTTGGTTTATTAAGAAATA] [-] EMBL CD075181 [ GATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTTTTCGTTAAATCATCAAACAAAGCCCCCAGCAACAGATGTGAATAATCGCGAAGTTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTTTCATGAAGCCATAAGTTTTAACAAACCTCTCGCTAACAATAGCAAGAAGGTTAAAAGACTTAGTGTGGATACTCAGCGTTCCCTGTAAGTTACTAAATATAATGCATTACTTTTTAGAGCTACAATACTTCCACGCGGCACTCAAAAGAAACAAGAAGATTTTCTTTCTGTACTTTTCAGCCGCAGATAGTATAACGTTTGAGATTATTGTACAGTCCTATGATCGAATATGTACCTATTTGTATTATTTTCGTTACTTATTCAATGTAAATAACTAAATTTTTGGTTTATTAAGAAATA] consensusID : consensus_8316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [TACCAGGCCAANAATTTGGCACGAGGCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTGTATTGTTTACAGAGCCTCGTTTTATGTCATTGTACTTCAGTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTCATGAAGCCATAAGTTCTAACANACCTCTCGCTAACAATAGCAAGAANGGCT-AAAGACTTAGTGTGGATACTCAGCGTTCACTAGCTACAATACTTNCACGCGGCACTC-AAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCCG-AGATAGTAT-ACGTCTGAG-TTATTG-ACAGT-CTATGATCG-ATATGTA-CTATTTGNATTA-TTTCG-TACTTA-TC-ATGT-AAT-ACTAA--TTTTGGNTTATAGAGAAATA] [+] EMBL CD081112 [TACCAGGCCAANAATTTGGCACGAGGCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTGTATTGTTTACAGAGCCTCGTTTTATGTCATTGTACTTCAGTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTCATGAAGCCATAAGTTCTAACANACCTCTCGCTAACAATAGCAAGAANGGCT AAAGACTTAGTGTGGATACTCAGCGTTCACTAGCTACAATACTTNCACGCGGCACTC AAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCCG AGATAGTAT ACGTCTGAG TTATTG ACAGT CTATGATCG ATATGTA CTATTTGNATTA TTTCG TACTTA TC ATGT AAT ACTAA TTTTGGNTTATAG ] [-] EMBL CD074935 [ TTTGAATTCCTGCTGGAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTGTATTGTTTACAGAGCCTCGTTTTATGTCATTGTACTTCAGTTTAGATTTTGGCGAAATTCGAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTCATGAAGCCATAAGTTCTAACAAACCTCTCGCTAACAATAGCAAGAA GGCTAAAAGACTTAGTGTGGATACTCAGCGTTCACTAGCTACAATACTTCCACGCGGCACTCAAAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCCGCAGATAGTATAACGTCTGAGATTATTGTACAGTCCTATGATCGAATATGTACCTATTTGTATTATTTTCGTTACTTATTCAATGTAAATAACTAAATTTTTGGTTTATTAAGAAATA] consensusID : consensus_8316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CGGGCCAANAATAGCGGCACGAGGGCGAAGTTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTAGGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATATACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGGTACTTTGTACCAAACATATTTACAAAAATTATGTAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGGTAAGTTAAAACCTAGCATCAATATGGGTAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAACAAGCCACC] [+] EMBL CD081349 [CGGGCCAANAATAGCGGCACGAGGGCGAAGTTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTAGGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATATACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTAGATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGATGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGAACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAAAAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGGTACTTTGTACCAAACATATTTACAAAAATTATGTAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAGTCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGGTAAGTTAAAACCTAGCATCAATATGGGTAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTCTTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTACCGTCTTCGTTAAATCATCAACAAGCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8316#0 TCCATTGGCTACAGTCATAGTATGGCCTAAAGTTTAAACATTGACCTCATCCCACCGAAG 60 consensus_8316#1 ------------------------------------------------------------ consensus_8316#2 ------------------------------CGGGCCAANAATAGCGGCACGAGGGCGAAG 30 consensus_8316#0 TTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTA 120 consensus_8316#1 ------------------------------------------------------------ consensus_8316#2 TTATATATACCATGCACTGGGCAAATTTCTAATTACTCCAAAAATCAAGTTTCCTGTTTA 90 consensus_8316#0 GGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATA 180 consensus_8316#1 ------------------------------------------------------------ consensus_8316#2 GGGAAGTTGCGAAGAACTTGGAGTTATCGGAATAAAGATATACTTATATCCCATATGATA 150 consensus_8316#0 TACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTA 240 consensus_8316#1 ------------------------TACCAGGCCAANAATTTGGCACGAGGCTCTTCTGTA 36 consensus_8316#2 TACATTCGATTCAAAAATCAACTACACAAATTCCTTTTTTTCAAATCATTCTCTTCTGTA 210 ** * * *** * * ********** consensus_8316#0 GATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGA 300 consensus_8316#1 GATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGA 96 consensus_8316#2 GATCTCCTTTGAGATTGTAGATTTTTTACAGGTTCGACGCAGTTTAGCACAACTTTGTGA 270 ************************************************************ consensus_8316#0 TGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGA 360 consensus_8316#1 TGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGA 156 consensus_8316#2 TGGTCCTATCCTAAATGGGATTTCAAATTTTTGTACTATGTCCTTAAAATGTAAAAGTGA 330 ************************************************************ consensus_8316#0 ACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAA 420 consensus_8316#1 ACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAA 216 consensus_8316#2 ACATTGTGTGAGTGGACATACTTTGGATCATGCACTAGTATGCCTAATTCAATTGTATAA 390 ************************************************************ consensus_8316#0 AAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAG------------------ 462 consensus_8316#1 AAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAG------------------ 258 consensus_8316#2 AAAAGTAGAAACATTGCTTATTCGTTTGAATTCCTGCTGGAGGTACTTTGTACCAAACAT 450 ****************************************** consensus_8316#0 -------------------ATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAG 503 consensus_8316#1 -------------------ATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAG 299 consensus_8316#2 ATTTACAAAAATTATGTAGATCATGTGAAGCACAGTTTACTACCGGACACTTTACCAAAG 510 ***************************************** consensus_8316#0 TCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAG----------------------- 540 consensus_8316#1 TCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAG----------------------- 336 consensus_8316#2 TCCTCTTATTAATAATGACAGTACTTTCAGGTTTAAGGTAAGTTAAAACCTAGCATCAAT 570 ************************************* consensus_8316#0 --------AGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTC 592 consensus_8316#1 --------AGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTC 388 consensus_8316#2 ATGGGTAGAGTTCAATCTCTTAATTCTCTAGATGAAGTTAACTGTTGTTATGGTAACCTC 630 **************************************************** consensus_8316#0 TTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTA 652 consensus_8316#1 TTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTA 448 consensus_8316#2 TTTGCAGTTCGGAGATCTTTAACAGATACAAAGACTTGGCTACCATCTGATATTACTCTA 690 ************************************************************ consensus_8316#0 CCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGT- 711 consensus_8316#1 CCGTCTTCGTTAAATCATCAAACAAAGCCACCAGCAACAGATGTGAATAATCGCGAAGTG 508 consensus_8316#2 CCGTCTTCGTTAAATCATCAAC--AAGCCACC---------------------------- 720 ********************* ******** consensus_8316#0 ----------------------------------------TTTAGATTTTGGCGAAATTC 731 consensus_8316#1 TATTGTTTACAGAGCCTCGTTTTATGTCATTGTACTTCAGTTTAGATTTTGGCGAAATTC 568 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 GAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTC 791 consensus_8316#1 GAACTAAAGATATCCCAAAGTTTTTGACTGCAAAAGGGACTCCTGATAATTCCGATTCTC 628 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 ATGAAGCCATAAGTTCTAACAAACCTCTCGCTAACAATAGCAAGAAGGCTAAAAGACTTA 851 consensus_8316#1 ATGAAGCCATAAGTTCTAACANACCTCTCGCTAACAATAGCAAGAANGGCTAAAGACTTA 688 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 GTGTGGATACTCAGCGTTCACTGTAAGTTACTAAATATAATGCATTACTTTTTAGAGCTA 911 consensus_8316#1 GTGTGGATACTCAGCGTTCACT---------------------------------AGCTA 715 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 CAATACTTCCACGCGGCACTCAAAAGAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCC 971 consensus_8316#1 CAATACTTNCACGCGGCACTCAAA-GAAACAAGAAGATCTTCTTTCTGTACTTCTCAGCC 774 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 GCAGATAGTATAACGTCTGAGATTATTGTACAGTCCTATGATCGAATATGTACCTATTTG 1031 consensus_8316#1 G-AGATAGTATA-CGTCTGAG-TTATTG-ACAGTC-TATGATCGA-TATGTAC-TATTTG 827 consensus_8316#2 ------------------------------------------------------------ consensus_8316#0 TATTATTTTCGTTACTTATTCAATGTAAATAACTAAATTTTTGGTTTATTAAGAAATA 1089 consensus_8316#1 NATTATTTCG--TACTTATC--ATGTAAT--ACTAA--TTTTGGNTTATAGAGAAATA 877 consensus_8316#2 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||