These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1104 fasta sequence [AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCTTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGATCGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCGCGGTTATTTTAATCTGGTATTGTTGCTCACGAAAAAAAAGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGGTTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGC-ACTAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC] [+] EMBL CD183657 [AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCTTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGATCGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCGCGGTTATTTTAATCTGGTATTGTTGCTCACGAAAAAAAAGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGGTTTGT ] [+] EMBL CD166891 [ CAAAATTTTTTTCAGAGACGTTCCTCGCTGATATATGTTGCGACAATAAAGGTACTGTTTTGTGCGAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTGTGCTACGA ] [+] EMBL CD082364 [ AGAAAATTACCAATCTGAACGATTGCCATCTTGAACATGCCTATCTACTCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGTTTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGC ACTAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC] [-] EMBL CD112087 [ AGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATTTTGTTTGGGCTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTTTTTTAATACA GATGCAACTAATCATTTTATTTCTTATAAAAACTGTCTGAAAAACAC ] consensusID : consensus_8318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TTTGGCAAACTTTGAACACCGAAACTAGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTACTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCACGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGAATAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGAACAATGTAACACCATATGCTAGTNTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAA] [+] EMBL AI977074 [TTTGGCAAACTTTGAACACCGAAACTAGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTACTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCACGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGAATAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGAACAATGTAACACCATATGCTAGTNTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAA] consensusID : consensus_8318#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [GAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCCTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGATCGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCACGGTTATTCTAATCTGGTATTGTTGCTCACGACATTCAAATCAGATGTGATGGAAGAACCTGCCAT] [+] EMBL AI977578 [GAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCCTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGATCGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCACGGTTATTCTAATCTGGTATTGTTGCTCACGACATTCAAATCAGATGTGATGGAAGAACCTGCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8318#0 AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTT 60 consensus_8318#2 ----------------------------------------GAAGTGTATAATACAAAGTT 20 consensus_8318#1 ----------------------------------TTTGGCAAACTTTGAACACCGAAACT 26 ** * * * * ** * consensus_8318#0 ACATACTGTGAA------AAGGGATAAATAATATCA---TCGTTGTATGGGTT-CTTCAA 110 consensus_8318#2 ACATACTGTGAA------AAGGGATAAATAATATCA---TCGTTGTATGGGTT-CTTCAA 70 consensus_8318#1 AGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTA 86 * * * ** ** ** ** ** *** * * ** ** * consensus_8318#0 CATCGAAGCATCCTTCCAATGCAA--AATTTTTTTCAGAGACGTTCCTCGCTGATAT--A 166 consensus_8318#2 CATCGAAGCATCCCTCCAATGCAA--AATTTTTTTCAGAGACGTTCCTCGCTGATAT--A 126 consensus_8318#1 CTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCA 146 * **** ** * * ** ** * * * *** * * * * * consensus_8318#0 GGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGT 226 consensus_8318#2 GGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGT 186 consensus_8318#1 CGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGC 206 * * * * ** * * * * * * *** * ** ** ** * consensus_8318#0 GGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCA-TTAAACGCTGCAAGTG 285 consensus_8318#2 GGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCA-TTAAACGCTGCAAGTG 245 consensus_8318#1 CTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATG-ATGAA 265 * ** ** * **** * * * * * * ** * * consensus_8318#0 TACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGAT 345 consensus_8318#2 TACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGAT 305 consensus_8318#1 TAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGA--ACAAT 323 ** * ** ** * * * * ** * * * * * ** *** ** ** consensus_8318#0 CGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCT-ATTCGCGGTTATTTTAA 404 consensus_8318#2 CGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCT-ATTCACGGTTATTCTAA 364 consensus_8318#1 GTAACACCATATGCTAGTNTT-GTTAATCTAGCACCAGGACAGACACAAGGATACTCTAC 382 ** * * ** **** ** * * * * * ** ** * ** consensus_8318#0 TCTGGTATTGTTGCTCACG-AAAAAAAAGAGAGAAAAAGAAAATTACCAAGC-TGAACGA 462 consensus_8318#2 TCTGGTATTGTTGCTCACG-ACATTCAAATCAGATGTGATGGAAGAACCTGC-CAT---- 418 consensus_8318#1 TTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAA 442 * * ** *** * * * * consensus_8318#0 TTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGT 522 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 A----------------------------------------------------------- 443 consensus_8318#0 AATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACT 582 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 GATGTGAACAATGTAACACCATATGCTAGGTTTGTTAATCTAGCACCAGGACAGACACAA 642 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 GGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTC 702 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 GATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGT 762 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 CAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATT 822 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 GATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCA 882 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 CAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTAC 942 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 ATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAA 1002 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 GATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGCAC 1062 consensus_8318#2 ------------------------------------------------------------ consensus_8318#1 ------------------------------------------------------------ consensus_8318#0 TAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC 1104 consensus_8318#2 ------------------------------------------ consensus_8318#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||