These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 600 fasta sequence [CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC] [+] EMBL CD159954 [CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG ] [+] EMBL CD159961 [ caATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGAC AAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCTCTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG ] [-] EMBL CD188736 [ CACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAA ] [-] EMBL CD193543 [ ATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC] [-] EMBL CD132201 [ AGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGA ] consensusID : consensus_8320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT] [+] EMBL CD135767 [AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8320#0 CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCA 60 consensus_8320#1 ------------------------------------------------------------ consensus_8320#0 TCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTT 120 consensus_8320#1 -------------------------------------AACTGGATGAAAATGGA--ATTT 21 * * * ** *** * ** consensus_8320#0 TCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACG 180 consensus_8320#1 TTTATG---AAGAAAAACGGGCGCCTTTAA-AATTGAAAGTCGAAAATACAATACGT-TG 76 * * ** **** *** **** ** ** * ** *** * * consensus_8320#0 AATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTC 240 consensus_8320#1 GAGGATTGGTAAAACACCTGATGGTGAAAT-------GATTCATGAGTCAAATGCTCGTA 129 * * *** *** ** * *** * * * ****** * * *** ** * consensus_8320#0 TACATCCTCAGC--GTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCT 298 consensus_8320#1 TTGTTCGTTGGTCGGATGGTTCTCTG----TCACTACATCTTGGGGACGAAATTTTCGAC 185 * ** * * * * **** ** *** ** * * * ** * consensus_8320#0 AATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTA 358 consensus_8320#1 ATACACAAAGTAG-ATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGT-- 242 * * * ** * * ** * ** ** **** * * * * consensus_8320#0 GGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGT 418 consensus_8320#1 GGTTTAC--AAGGACAATCAAGT---TTGAAAACT------------------------- 272 ** *** * ** *** * **** ** consensus_8320#0 GAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTT 478 consensus_8320#1 ------------------------------------------------------------ consensus_8320#0 TCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGT 538 consensus_8320#1 ------------------------------------------------------------ consensus_8320#0 GTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGT 598 consensus_8320#1 ------------------------------------------------------------ consensus_8320#0 TC 600 consensus_8320#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||