Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8320 cluster # 8320       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8320#0 length = 600 sequences # 5  
consensus_8320#1 length = 272 sequences # 1  

consensusID : consensus_8320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 600
fasta sequence
                              [CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC]

[+] EMBL CD159954             [CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG                                                                                                                                                                                                                                  ]
[+] EMBL CD159961             [ caATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGAC AAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCTCTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG                                                                                                                                                                                                                                  ]
[-] EMBL CD188736             [                                                                                                                                                                                CACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAA                                                                                                                                                ]
[-] EMBL CD193543             [                                                                                                                                                                                                                                       ATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC]
[-] EMBL CD132201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGA        ]


>consensus_8320#0 CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCA TCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTT TCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACG AATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTC TACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAA TTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGG ACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGA GTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTC GTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGT TTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC



consensusID : consensus_8320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence
                              [AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT]

[+] EMBL CD135767             [AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT]


>consensus_8320#1 AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCG AAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAA ATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTT TCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTA GTGGTTTACAAGGACAATCAAGTTTGAAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8320#0      CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCA 60
consensus_8320#1      ------------------------------------------------------------
                                                                                  

consensus_8320#0      TCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTT 120
consensus_8320#1      -------------------------------------AACTGGATGAAAATGGA--ATTT 21
                                                           *  * *     ** ***  * **

consensus_8320#0      TCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACG 180
consensus_8320#1      TTTATG---AAGAAAAACGGGCGCCTTTAA-AATTGAAAGTCGAAAATACAATACGT-TG 76
                      *  *     ** ****   ***   ****  ** ** *  **        ***  *   *

consensus_8320#0      AATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTC 240
consensus_8320#1      GAGGATTGGTAAAACACCTGATGGTGAAAT-------GATTCATGAGTCAAATGCTCGTA 129
                       *  * *** *** ** * ***  *    *       * ****** * * ***  ** * 

consensus_8320#0      TACATCCTCAGC--GTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCT 298
consensus_8320#1      TTGTTCGTTGGTCGGATGGTTCTCTG----TCACTACATCTTGGGGACGAAATTTTCGAC 185
                      *   ** *  *   * *  **** **    *** **    * *     *  ** *     

consensus_8320#0      AATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTA 358
consensus_8320#1      ATACACAAAGTAG-ATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGT-- 242
                      *      *   *  ** * * **   * **  ** ****   *       *   *  *  

consensus_8320#0      GGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGT 418
consensus_8320#1      GGTTTAC--AAGGACAATCAAGT---TTGAAAACT------------------------- 272
                      **  ***   * **  ***   *    ****  **                         

consensus_8320#0      GAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTT 478
consensus_8320#1      ------------------------------------------------------------
                                                                                  

consensus_8320#0      TCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGT 538
consensus_8320#1      ------------------------------------------------------------
                                                                                  

consensus_8320#0      GTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGT 598
consensus_8320#1      ------------------------------------------------------------
                                                                                  

consensus_8320#0      TC 600
consensus_8320#1      --
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)