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Schistosoma mansoni
cluster # 8321 cluster # 8321       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8321#0 length = 869 sequences # 4  
consensus_8321#1 length = 449 sequences # 1  
consensus_8321#2 length = 304 sequences # 1  

consensusID : consensus_8321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 869
fasta sequence
                              [CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG-AAGTAATGCTCATTATG-AAGT-AAGTTCAACTTCCTAATCTTC-AAAAAAAAAGGTTTTTTTTG-TGG-TTATAGTACTTTG-TTGGTTGTC-TAANGA-TNTATACCA--TTTAAATG-AC-TTTATGG-AAT-ATAG-TCTTC-TC-ATGAAA--TGT-CT-AACTG-TCG-TTCTACTGCTAGACTCT]

[+] EMBL CD081135             [CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAAGT ATGCTCATTATGAAAGT AAGTTCAACTTCCTAATCTTC AAAAAAAAAGGTTTTTTTTG TGG TTATAGTACTTTG TTGGTTGTC TAANGA TNTATACCA  TTTAAATG AC TTTATGG AAT ATAG TCTTC TC ATGAAA  TGT CT AACTG TCG TTCTACTG         ]
[-] EMBL CD143028             [                                                                                                                                       aTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATG                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD074958             [                                                                                                                                                                                                                                              nATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG AAGTAATGCTCATTATG AAGTAAAGTTCAACTTCCTAATCTTCAAAAAAAAAAGGTTTTTTTTGTTGGTTTATAGTACTTTGTTTGTTTGTCTTAGTGATTTTATACCATTTTTAATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTACTAAACTGTTCGTTTCT TAACTAGACTCT]
[+] EMBL SM719                [                                                                                                                                                                                                                                                                TTAATGGGAATTACA TCGATGAAGGTGGTGTAAAAGAA TTTTAGATGGACA TATTTGGATGGAGATC TTA TTAGATCGTGAACGTAAGACATNT AAGGTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTC TTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAGAAAGAAGTTGTAAATCATCCTGATTATAAGC AATTATTGATGTTTTAAAAA TAATCCGAAAGATGTACCAGAA TTGCTACTGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTGGATA TTGATAATATTCAATAAAG AAGTAATGCTCA TATG AAG      TCAACTTCCTAATCTTC    AAAAAAGGTTT                                                                                                                                     ]


>consensus_8321#0 CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGAC ATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAAC ATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTT GGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGA TGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTT AGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGC TTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGG TCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGG TTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGA ACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAA TCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAA AATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAG TAAGTTCAACTTCCTAATCTTCAAAAAAAAAGGTTTTTTTTGTGGTTATAGTACTTTGTT GGTTGTCTAANGATNTATACCATTTAAATGACTTTATGGAATATAGTCTTCTCATGAAAT GTCTAACTGTCGTTCTACTGCTAGACTCT



consensusID : consensus_8321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA]

[-] EMBL SMAA33972            [TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA]


>consensus_8321#1 TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCT GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT TGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACAT TCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAA ACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGT AAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAA GACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACT GACGAAGCTGGGTCGTTCTTTAAATTCAA



consensusID : consensus_8321#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence
                              [TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395475             [TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA]


>consensus_8321#2 TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTT ATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATT CAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTT TTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGA ACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8321#0      -------------CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCC 47
consensus_8321#1      TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCT 60
consensus_8321#2      ----------------------------------TATAAGCAATTTTGGTGTTTTAAAAT 26
                                                             ***** * *    * * *   

consensus_8321#0      GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 107
consensus_8321#1      GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 120
consensus_8321#2      TAACCGGAAAG---TGTCCCAGATTTGCTACTGTT-----TTATCAGGAAGAATGTGATG 78
                       * *** ** *   * ***   * *  * *  ***     **     * * * * ** * 

consensus_8321#0      TGGGCTCTCAAACATGTACTTTGGACTCGT-TTTGGCGAGATCAAACAT-GTATCATTAC 165
consensus_8321#1      TGGGCTCTCAAACATGTACTTTGGACTCAT-TTTGGCGAGATCAAACAT-GTATCATTAC 178
consensus_8321#2      ATGCTTGTAAAATGTG-AATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGC 137
                        *  * * ***  ** * * *    *  * ****   * **  ** *  * *  * * *

consensus_8321#0      ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTT 225
consensus_8321#1      ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAA-TTTAAGTTACTT 237
consensus_8321#2      -TCATTATGAAGTTCAACTTCCTAATCTT--CAAAAAAAAGGTTTT--TTGTTGTTGGTT 192
                       *  **  *  ***     *   *** **  * *    *** *     **   * *  **

consensus_8321#0      AAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 285
consensus_8321#1      AAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 297
consensus_8321#2      TATAG-TACTTTGTTTGTTTGCCTTAGTGATTTTATA------CCATTCTATTGAACTTT 245
                       * *  *  ****  **   **  **   * ** **        ***** **  *  *  

consensus_8321#0      TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 345
consensus_8321#1      TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 357
consensus_8321#2      TATGGAAATA-------ATAGTTCTT-CTTCAATGAAAATTGTTCTAAAAAAAAAAAAAA 297
                      * *  **  *       ** *   **  **  *** * **  ** *  * *     **  

consensus_8321#0      TAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 405
consensus_8321#1      AAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 417
consensus_8321#2      AAAAAAA----------------------------------------------------- 304
                       ** * *                                                     

consensus_8321#0      ACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAA 465
consensus_8321#1      ACTGACGAAGCTGGGTCGTTCTTTAAATTCAA---------------------------- 449
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      TATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGT 525
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      CCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAA 585
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      TGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATG 645
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      TGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAGTA 705
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      ATGCTCATTATGAAGTAAGTTCAACTTCCTAATCTTCAAAAAAAAAGGTTTTTTTTGTGG 765
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      TTATAGTACTTTGTTGGTTGTCTAANGATNTATACCATTTAAATGACTTTATGGAATATA 825
consensus_8321#1      ------------------------------------------------------------
consensus_8321#2      ------------------------------------------------------------
                                                                                  

consensus_8321#0      GTCTTCTCATGAAATGTCTAACTGTCGTTCTACTGCTAGACTCT 869
consensus_8321#1      --------------------------------------------
consensus_8321#2      --------------------------------------------
                                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)