These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 869 fasta sequence [CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG-AAGTAATGCTCATTATG-AAGT-AAGTTCAACTTCCTAATCTTC-AAAAAAAAAGGTTTTTTTTG-TGG-TTATAGTACTTTG-TTGGTTGTC-TAANGA-TNTATACCA--TTTAAATG-AC-TTTATGG-AAT-ATAG-TCTTC-TC-ATGAAA--TGT-CT-AACTG-TCG-TTCTACTGCTAGACTCT] [+] EMBL CD081135 [CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAAGT ATGCTCATTATGAAAGT AAGTTCAACTTCCTAATCTTC AAAAAAAAAGGTTTTTTTTG TGG TTATAGTACTTTG TTGGTTGTC TAANGA TNTATACCA TTTAAATG AC TTTATGG AAT ATAG TCTTC TC ATGAAA TGT CT AACTG TCG TTCTACTG ] [-] EMBL CD143028 [ aTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATG ] [-] EMBL CD074958 [ nATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG AAGTAATGCTCATTATG AAGTAAAGTTCAACTTCCTAATCTTCAAAAAAAAAAGGTTTTTTTTGTTGGTTTATAGTACTTTGTTTGTTTGTCTTAGTGATTTTATACCATTTTTAATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTACTAAACTGTTCGTTTCT TAACTAGACTCT] [+] EMBL SM719 [ TTAATGGGAATTACA TCGATGAAGGTGGTGTAAAAGAA TTTTAGATGGACA TATTTGGATGGAGATC TTA TTAGATCGTGAACGTAAGACATNT AAGGTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTC TTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAGAAAGAAGTTGTAAATCATCCTGATTATAAGC AATTATTGATGTTTTAAAAA TAATCCGAAAGATGTACCAGAA TTGCTACTGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTGGATA TTGATAATATTCAATAAAG AAGTAATGCTCA TATG AAG TCAACTTCCTAATCTTC AAAAAAGGTTT ] consensusID : consensus_8321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA] [-] EMBL SMAA33972 [TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA] consensusID : consensus_8321#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395475 [TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8321#0 -------------CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCC 47 consensus_8321#1 TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCT 60 consensus_8321#2 ----------------------------------TATAAGCAATTTTGGTGTTTTAAAAT 26 ***** * * * * * consensus_8321#0 GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 107 consensus_8321#1 GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 120 consensus_8321#2 TAACCGGAAAG---TGTCCCAGATTTGCTACTGTT-----TTATCAGGAAGAATGTGATG 78 * *** ** * * *** * * * * *** ** * * * * ** * consensus_8321#0 TGGGCTCTCAAACATGTACTTTGGACTCGT-TTTGGCGAGATCAAACAT-GTATCATTAC 165 consensus_8321#1 TGGGCTCTCAAACATGTACTTTGGACTCAT-TTTGGCGAGATCAAACAT-GTATCATTAC 178 consensus_8321#2 ATGCTTGTAAAATGTG-AATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGC 137 * * * *** ** * * * * * **** * ** ** * * * * * * consensus_8321#0 ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTT 225 consensus_8321#1 ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAA-TTTAAGTTACTT 237 consensus_8321#2 -TCATTATGAAGTTCAACTTCCTAATCTT--CAAAAAAAAGGTTTT--TTGTTGTTGGTT 192 * ** * *** * *** ** * * *** * ** * * ** consensus_8321#0 AAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 285 consensus_8321#1 AAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 297 consensus_8321#2 TATAG-TACTTTGTTTGTTTGCCTTAGTGATTTTATA------CCATTCTATTGAACTTT 245 * * * **** ** ** ** * ** ** ***** ** * * consensus_8321#0 TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 345 consensus_8321#1 TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 357 consensus_8321#2 TATGGAAATA-------ATAGTTCTT-CTTCAATGAAAATTGTTCTAAAAAAAAAAAAAA 297 * * ** * ** * ** ** *** * ** ** * * * ** consensus_8321#0 TAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 405 consensus_8321#1 AAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 417 consensus_8321#2 AAAAAAA----------------------------------------------------- 304 ** * * consensus_8321#0 ACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAA 465 consensus_8321#1 ACTGACGAAGCTGGGTCGTTCTTTAAATTCAA---------------------------- 449 consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 TATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGT 525 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 CCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAA 585 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 TGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATG 645 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 TGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAGTA 705 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 ATGCTCATTATGAAGTAAGTTCAACTTCCTAATCTTCAAAAAAAAAGGTTTTTTTTGTGG 765 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 TTATAGTACTTTGTTGGTTGTCTAANGATNTATACCATTTAAATGACTTTATGGAATATA 825 consensus_8321#1 ------------------------------------------------------------ consensus_8321#2 ------------------------------------------------------------ consensus_8321#0 GTCTTCTCATGAAATGTCTAACTGTCGTTCTACTGCTAGACTCT 869 consensus_8321#1 -------------------------------------------- consensus_8321#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||