These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 927 fasta sequence [TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGATTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTCGTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTGGAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCATTACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAAGCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTTCCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATAC-AGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTGAAGCCAAGTTCCGTGAGCCGTCGGTAC] [+] EMBL CD201781 [TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGATTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTCGTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTGGAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCATTACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAAGCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTTCCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTC ATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACC ] [+] EMBL CD167398 [ GAAC TTGACCATGATAGCT AGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCC TTGCTTCTTCGATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATACAAGTTTTTGGCTGGG ] [+] EMBL CD128388 [ TTTGA CATGATAGCT AGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTAAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAA ] [-] EMBL CD128236 [ GCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATAC AGTTTTTGGCTGG ] [-] EMBL CD128374 [ CTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAAC AGCCC AATAGTTCTTCCTTCATTAATAC AGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTGAAGCCAAGTTCCGTGAGCCGTCGGTAC] consensusID : consensus_8356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CCTCATATTTCGCAGGTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGC] [+] EMBL CD061005 [CCTCATATTTCGCAGGTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8356#0 TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGA 60 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 TTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTC 120 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 GTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTG 180 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 GAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCAT 240 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 TACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAA 300 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 GCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTT 360 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 CCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGG 420 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 CAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTG 480 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 CTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTT 540 consensus_8356#1 -----------------------------CCTCATATTTCGCA-GGTGAACCACCTATTT 30 * * ** * * * ************** consensus_8356#0 TACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCT 600 consensus_8356#1 TACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCT 90 ************************************* ********************** consensus_8356#0 CTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTT 660 consensus_8356#1 CTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTT 150 ********** ************************************************* consensus_8356#0 TAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCT 720 consensus_8356#1 TAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCT 210 ************************************************************ consensus_8356#0 CACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATAC 780 consensus_8356#1 CACCTATGC--------------------------------------------------- 219 ********* consensus_8356#0 CTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAG 840 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 TTCTTCCTTCATTAATACAGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTG 900 consensus_8356#1 ------------------------------------------------------------ consensus_8356#0 AAGCCAAGTTCCGTGAGCCGTCGGTAC 927 consensus_8356#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||